Xiuwei Zhang
Xiuwei Zhang
Verified email at berkeley.edu - Homepage
TitleCited byYear
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093, 2013
5072013
Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis
B Mahata, X Zhang, AA Kolodziejczyk, V Proserpio, L Haim-Vilmovsky, ...
Cell reports 7 (4), 1130-1142, 2014
1192014
Evolution of oligomeric state through allosteric pathways that mimic ligand binding
T Perica, Y Kondo, SP Tiwari, SH McLaughlin, KR Kemplen, X Zhang, ...
Science 346, 2014
432014
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lönnberg, ...
Genome Biology 17 (1), 103, 2016
382016
Evolution of protein structures and interactions from the perspective of residue contact networks
X Zhang, T Perica, SA Teichmann
Current opinion in structural biology 23 (6), 954-963, 2013
312013
Refining transcriptional regulatory networks using network evolutionary models and gene histories
X Zhang, BME Moret
Algorithms for Molecular Biology 5 (1), 1, 2010
212010
Boosting the performance of inference algorithms for transcriptional regulatory networks using a phylogenetic approach
X Zhang, B Moret
Algorithms in Bioinformatics, 245-258, 2008
142008
Refining regulatory networks through phylogenetic transfer of information
X Zhang, BME Moret
IEEE/ACM transactions on computational biology and bioinformatics 9 (4 …, 2012
92012
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
RJ Miragaia, X Zhang, T Gomes, V Svensson, T Ilicic, J Henriksson, G Kar, ...
Scientific Reports 8, 685, 2018
82018
Improving inference of transcriptional regulatory networks based on network evolutionary models
X Zhang, BME Moret
Proceedings of the 9th international conference on Algorithms in …, 2009
62009
Bioinformatics Research and Applications
X Zhang, BME Moret
52011
ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks
X Zhang, B Moret
Bioinformatics Research and Applications, 344-357, 2011
52011
Analysis of coevolving gene families using mutually exclusive orthologous modules
X Zhang, M Kupiec, U Gophna, T Tuller
Genome biology and evolution 3, 413-423, 2011
52011
Neural network approach to predict RNA secondary structures [J]
X ZHANG, Z DENG, D SONG
Journal of Tsinghua University (Science and Technology) 10, 2006
52006
NEMo: An Evolutionary Model with Modularity for PPI Networks
M Ye, X Zhang, GC Racz, Q Jiang, BME Moret
IEEE Transactions on NanoBioscience 16 (2), 131-139, 2017
42017
Phylogenetic transfer of knowledge for biological networks
X Zhang, MI Ye, B Moret
PeerJ PrePrints, 2014
32014
Simulating multiple faceted variability in single cell RNA sequencing
X Zhang, C Xu, N Yosef
Nature communications 10 (1), 2611, 2019
22019
A new way to build cell lineages
X Zhang, N Yosef
eLife 6, e25654, 2017
12017
Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks
X Zhang, M Zaheri, BME Moret
BioMedical Engineering and Informatics, 2008. BMEI 2008. International …, 2008
12008
Maximum Likelihood Reconstruction of Ancestral Networks by Integer Linear Programming
V Rajan, C Kingsford, X Zhang
bioRxiv, 574814, 2019
2019
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Articles 1–20