|An integrated genomic analysis of human glioblastoma multiforme|
DW Parsons, S Jones, X Zhang, JCH Lin, RJ Leary, P Angenendt, ...
science 321 (5897), 1807-1812, 2008
|Core signaling pathways in human pancreatic cancers revealed by global genomic analyses|
S Jones, X Zhang, DW Parsons, JCH Lin, RJ Leary, P Angenendt, ...
science 321 (5897), 1801-1806, 2008
|The genomic landscapes of human breast and colorectal cancers|
LD Wood, DW Parsons, S Jones, J Lin, T Sj÷blom, RJ Leary, D Shen, ...
Science 318 (5853), 1108-1113, 2007
|Molecular definition of breast tumor heterogeneity|
M Shipitsin, LL Campbell, P Argani, S Weremowicz, N Bloushtain-Qimron, ...
Cancer cell 11 (3), 259-273, 2007
|The JAK2/STAT3 signaling pathway is required for growth of CD44+CD24– stem cell–like breast cancer cells in human tumors|
LLC Marotta, V Almendro, A Marusyk, M Shipitsin, J Schemme, SR Walker, ...
The Journal of clinical investigation 121 (7), 2723-2735, 2011
|The genetic landscape of the childhood cancer medulloblastoma|
DW Parsons, M Li, X Zhang, S Jones, RJ Leary, JCH Lin, SM Boca, ...
science 331 (6016), 435-439, 2011
|The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.|
L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ...
Nature biotechnology 28 (8), 827-838, 2010
|Regulation of in situ to invasive breast carcinoma transition|
M Hu, J Yao, DK Carroll, S Weremowicz, H Chen, D Carrasco, ...
Cancer cell 13 (5), 394-406, 2008
|The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance|
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
|A meiotic recombination checkpoint controlled by mitotic checkpoint genes|
D Lydall, Y Nikolsky, DK Bishop, T Weinert
Nature 383 (6603), 840-843, 1996
|Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers|
RJ Leary, JC Lin, J Cummins, S Boca, LD Wood, DW Parsons, S Jones, ...
Proceedings of the National Academy of Sciences 105 (42), 16224-16229, 2008
|Pathway mapping tools for analysis of high content data|
S Ekins, Y Nikolsky, A Bugrim, E Kirillov, T Nikolskaya
High Content Screening, 319-350, 2007
|Comparison of RNA-seq and microarray-based models for clinical endpoint prediction|
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16 (1), 1-12, 2015
|A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages|
Y Yu, JC Fuscoe, C Zhao, C Guo, M Jia, T Qing, DI Bannon, L Lancashire, ...
Nature communications 5 (1), 1-11, 2014
|Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis|
R Kleemann, L Verschuren, MJ van Erk, Y Nikolsky, NHP Cnubben, ...
Genome biology 8 (9), 1-16, 2007
|Cell type-specific DNA methylation patterns in the human breast|
N Bloushtain-Qimron, J Yao, EL Snyder, M Shipitsin, LL Campbell, ...
Proceedings of the National Academy of Sciences 105 (37), 14076-14081, 2008
|Early prediction of drug metabolism and toxicity: systems biology approach and modeling|
A Bugrim, T Nikolskaya, Y Nikolsky
Drug discovery today 9 (3), 127-135, 2004
|Techniques: application of systems biology to absorption, distribution, metabolism, excretion and toxicity|
S Ekins, Y Nikolsky, T Nikolskaya
Trends in pharmacological sciences 26 (4), 202-209, 2005
|Effect of training-sample size and classification difficulty on the accuracy of genomic predictors|
V Popovici, W Chen, BD Gallas, C Hatzis, W Shi, FW Samuelson, ...
Breast Cancer Research 12 (1), 1-13, 2010
|A comprehensive functional analysis of tissue specificity of human gene expression|
Z Dezső, Y Nikolsky, E Sviridov, W Shi, T Serebriyskaya, D Dosymbekov, ...
BMC biology 6 (1), 1-15, 2008