Global sensitivity analysis challenges in biological systems modeling A Kiparissides, SS Kucherenko, A Mantalaris, EN Pistikopoulos Industrial & Engineering Chemistry Research 48 (15), 7168-7180, 2009 | 176 | 2009 |
‘Closing the loop’in biological systems modeling—From the in silico to the in vitro A Kiparissides, M Koutinas, C Kontoravdi, A Mantalaris, EN Pistikopoulos Automatica 47 (6), 1147-1155, 2011 | 111 | 2011 |
Bioprocess systems engineering: transferring traditional process engineering principles to industrial biotechnology M Koutinas, A Kiparissides, EN Pistikopoulos, A Mantalaris Computational and structural biotechnology journal 3 (4), e201210022, 2012 | 95 | 2012 |
Improving embryonic stem cell expansion through the combination of perfusion and bioprocess model design D Yeo, A Kiparissides, JM Cha, C Aguilar-Gallardo, JM Polak, E Tsiridis, ... PLoS One 8 (12), e81728, 2013 | 52 | 2013 |
The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid M Koutinas, MC Lam, A Kiparissides, R Silva‐Rocha, M Godinho, ... Environmental microbiology 12 (6), 1705-1718, 2010 | 45 | 2010 |
On the model‐based optimization of secreting mammalian cell (GS‐NS0) cultures A Kiparissides, EN Pistikopoulos, A Mantalaris Biotechnology and bioengineering 112 (3), 536-548, 2015 | 39 | 2015 |
Modelling the Delta1/Notch1 pathway: in search of the mediator (s) of neural stem cell differentiation A Kiparissides, M Koutinas, T Moss, J Newman, EN Pistikopoulos, ... PLoS One 6 (2), e14668, 2011 | 39 | 2011 |
Improving the accuracy of flux balance analysis through the implementation of carbon availability constraints for intracellular reactions M Lularevic, AJ Racher, C Jaques, A Kiparissides Biotechnology and bioengineering 116 (9), 2339-2352, 2019 | 38 | 2019 |
Thermodynamics-based Metabolite Sensitivity Analysis in metabolic networks A Kiparissides, V Hatzimanikatis Metabolic engineering 39, 117-127, 2017 | 36 | 2017 |
Linking genes to microbial growth kinetics—An integrated biochemical systems engineering approach M Koutinas, A Kiparissides, R Silva-Rocha, MC Lam, VAPM Dos Santos, ... Metabolic Engineering 13 (4), 401-413, 2011 | 36 | 2011 |
Computational approach for understanding and improving GS-NS0 antibody production under hyperosmotic conditions Y Ho, A Kiparissides, EN Pistikopoulos, A Mantalaris Journal of bioscience and bioengineering 113 (1), 88-98, 2012 | 26 | 2012 |
Design of in silico experiments as a tool for nonlinear sensitivity analysis of knowledge-driven models A Kiparissides, C Georgakis, A Mantalaris, EN Pistikopoulos Industrial & Engineering Chemistry Research 53 (18), 7517-7525, 2014 | 17 | 2014 |
Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid M Koutinas, A Kiparissides, MC Lam, R Silva-Rocha, M Godinho, ... Biochemical engineering journal 55 (2), 108-118, 2011 | 13 | 2011 |
Machine learning integrating protein structure, sequence, and dynamics to predict the enzyme activity of bovine enterokinase variants NAE Venanzi, A Basciu, AV Vargiu, A Kiparissides, PA Dalby, ... Journal of Chemical Information and Modeling 64 (7), 2681-2694, 2024 | 9 | 2024 |
The effects of illumination and trophic strategy on gene expression in Chlamydomonas reinhardtii V Sanchez-Tarre, A Kiparissides Algal Research 54, 102186, 2021 | 6 | 2021 |
Model development and analysis of mammalian cell culture systems A Kiparissides, M Koutinas, EN Pistikopoulos, A Mantalaris Process Systems Engineering: Volume 7: Dynamic Process Modeling 7, 403-439, 2010 | 4 | 2010 |
Elucidating lactate metabolism in industrial CHO cultures through the combined use of flux balance and principal component analyses M Luginsland, C Kontoravdi, A Racher, C Jaques, A Kiparissides Biochemical Engineering Journal 202, 109184, 2024 | 3 | 2024 |
Shedding light on phototrophic biomass production of Chlorella variabilis: The importance of dissolved CO2, light intensity and duty cycle. M Booth, A Spicer, A Kiparissides Biochemical Engineering Journal 179, 108315, 2022 | 2 | 2022 |
An in silico erythropoiesis model rationalizing synergism between stem cell factor and erythropoietin THH Phan, P Saraf, A Kiparissides, A Mantalaris, H Song, M Lim Bioprocess and biosystems engineering 36, 1689-1702, 2013 | 1 | 2013 |
On the model based optimization of secreting mammalian cell cultures via minimal glucose provision A Kiparissides, EN Pistikopoulos, A Mantalaris Computer Aided Chemical Engineering 29, 1210-1214, 2011 | 1 | 2011 |