Michael Stubbington
Michael Stubbington
CS Genetics
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Science forum: the human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
Elife 6, e27041, 2017
Single-cell reconstruction of the early maternal–fetal interface in humans
R Vento-Tormo, M Efremova, RA Botting, MY Turco, M Vento-Tormo, ...
Nature 563 (7731), 347-353, 2018
The Human Cell Atlas: from vision to reality
O Rozenblatt-Rosen, MJT Stubbington, A Regev, SA Teichmann
Nature News 550 (7677), 451, 2017
Single-cell transcriptomics to explore the immune system in health and disease
MJT Stubbington, O Rozenblatt-Rosen, A Regev, SA Teichmann
Science 358 (6359), 58-63, 2017
T cell fate and clonality inference from single-cell transcriptomes
MJT Stubbington, T Lönnberg, V Proserpio, S Clare, AO Speak, ...
Nature Methods, 2016
Decoding human fetal liver haematopoiesis
DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ...
Nature 574 (7778), 365-371, 2019
Aging increases cell-to-cell transcriptional variability upon immune stimulation
CP Martinez-Jimenez, N Eling, HC Chen, CA Vallejos, AA Kolodziejczyk, ...
Science 355 (6332), 1433-1436, 2017
Circulating and Tissue-resident CD4+ T Cells With Reactivity to Intestinal Microbiota Are Abundant in Healthy Individuals and Function is Altered During Inflammation
AN Hegazy, NR West, MJT Stubbington, E Wendt, KIM Suijker, A Datsi, ...
Gastroenterology, 2017
Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria
T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ...
Science Immunology 2 (9), eaal2192, 2017
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
E Madissoon, A Wilbrey-Clark, RJ Miragaia, K Saeb-Parsy, ...
Genome Biology 21 (1), 1-16, 2020
Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types
SJ Carmona, SA Teichmann, L Ferreira, IC Macaulay, MJT Stubbington, ...
Genome research 27 (3), 451-461, 2017
An atlas of mouse CD4+ T cell transcriptomes
MJT Stubbington, B Mahata, V Svensson, A Deonarine, JK Nissen, ...
Biology direct 10 (1), 14, 2015
BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq
I Lindeman, G Emerton, L Mamanova, O Snir, K Polanski, SW Qiao, ...
Nature Methods 15 (8), 563, 2018
Integrating T cell receptor sequences and transcriptional profiles by clonotype neighbor graph analysis (CoNGA)
SA Schattgen, K Guion, JC Crawford, A Souquette, AM Barrio, ...
Nature Biotechnology, 1-10, 2021
Single-cell analysis at the threshold
X Chen, JC Love, NE Navin, L Pachter, MJT Stubbington, V Svensson, ...
Nature Biotechnology 34 (11), 1111-1118, 2016
Two mutually exclusive local chromatin states drive efficient V (D) J recombination
DJ Bolland, H Koohy, AL Wood, LS Matheson, F Krueger, ...
Cell reports 15 (11), 2475-2487, 2016
The Human Cell Atlas White Paper
A Regev, S Teichmann, O Rozenblatt-Rosen, M Stubbington, K Ardlie, ...
arXiv preprint arXiv:1810.05192, 2018
Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE
YL Wu, MJT Stubbington, M Daly, SA Teichmann, C Rada
Journal of Experimental Medicine 214 (1), 183-196, 2017
The regulatory T Cell lineage factor Foxp3 regulates gene expression through several distinct mechanisms mostly independent of direct DNA binding
X Xie, MJT Stubbington, JK Nissen, KG Andersen, D Hebenstreit, ...
PLoS Genet 11 (6), e1005251, 2015
The Human Cell Atlas: technical approaches and challenges
CC Hon, JW Shin, P Carninci, MJT Stubbington
Briefings in functional genomics 17 (4), 283-294, 2017
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