Jesse Dixon
Jesse Dixon
Verified email at salk.edu
Title
Cited by
Cited by
Year
Topological domains in mammalian genomes identified by analysis of chromatin interactions
JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu, JS Liu, B Ren
Nature 485 (7398), 376-380, 2012
48872012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
41352015
A map of the cis-regulatory sequences in the mouse genome
Y Shen, F Yue, DF McCleary, Z Ye, L Edsall, S Kuan, U Wagner, J Dixon, ...
Nature 488 (7409), 116-120, 2012
12632012
Chromatin architecture reorganization during stem cell differentiation
JR Dixon, I Jung, S Selvaraj, Y Shen, JE Antosiewicz-Bourget, AY Lee, ...
Nature 518 (7539), 331-336, 2015
11722015
A high-resolution map of the three-dimensional chromatin interactome in human cells
F Jin, Y Li, JR Dixon, S Selvaraj, Z Ye, AY Lee, CA Yen, AD Schmitt, ...
Nature 503 (7475), 290-294, 2013
11262013
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
J Zuin, JR Dixon, MIJA van der Reijden, Z Ye, P Kolovos, RWW Brouwer, ...
Proceedings of the National Academy of Sciences 111 (3), 996-1001, 2014
6872014
Chromatin domains: the unit of chromosome organization
JR Dixon, DU Gorkin, B Ren
Molecular cell 62 (5), 668-680, 2016
5222016
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
S Selvaraj, JR Dixon, V Bansal, B Ren
Nature biotechnology 31 (12), 1111-1118, 2013
2722013
Allelic reprogramming of 3D chromatin architecture during early mammalian development
Z Du, H Zheng, B Huang, R Ma, J Wu, X Zhang, J He, Y Xiang, Q Wang, ...
Nature 547 (7662), 232-235, 2017
2552017
Bcl-6 and NF-κB cistromes mediate opposing regulation of the innate immune response
GD Barish, TY Ruth, M Karunasiri, CB Ocampo, J Dixon, C Benner, ...
Genes & development 24 (24), 2760-2765, 2010
2372010
Bayesian inference of spatial organizations of chromosomes
M Hu, K Deng, Z Qin, J Dixon, S Selvaraj, J Fang, B Ren, JS Liu
PLoS computational biology 9 (1), e1002893, 2013
2132013
Involvement of a mitochondrial phosphatase in the regulation of ATP production and insulin secretion in pancreatic β cells
DJ Pagliarini, SE Wiley, ME Kimple, JR Dixon, P Kelly, CA Worby, ...
Molecular cell 19 (2), 197-207, 2005
1462005
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388-1398, 2018
1442018
CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells
Y Li, CM Rivera, H Ishii, F Jin, S Selvaraj, AY Lee, JR Dixon, B Ren
PloS one 9 (12), e114485, 2014
1352014
A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
Y Diao, B Li, Z Meng, I Jung, AY Lee, J Dixon, L Maliskova, K Guan, ...
Genome research 26 (3), 397-405, 2016
1152016
Simultaneous profiling of 3D genome structure and DNA methylation in single human cells
DS Lee, C Luo, J Zhou, S Chandran, A Rivkin, A Bartlett, JR Nery, ...
Nature methods 16 (10), 999-1006, 2019
702019
Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis
C Attanasio, AS Nord, Y Zhu, MJ Blow, SC Biddie, EM Mendenhall, ...
Genome research 24 (6), 920-929, 2014
642014
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes
M Song, X Yang, X Ren, L Maliskova, B Li, IR Jones, C Wang, F Jacob, ...
Nature genetics 51 (8), 1252-1262, 2019
632019
A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells
J Gatchalian, S Malik, J Ho, DS Lee, TWR Kelso, MN Shokhirev, JR Dixon, ...
Nature communications 9 (1), 1-16, 2018
632018
Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
KC Akdemir, VT Le, S Chandran, Y Li, RG Verhaak, R Beroukhim, ...
Nature genetics 52 (3), 294-305, 2020
492020
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