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Panagiotis Ioannidis
Panagiotis Ioannidis
Postdoctoral fellow, Institute of Molecular Biology and Biotechnology, FORTH
Verified email at imbb.forth.gr - Homepage
Title
Cited by
Cited by
Year
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
FA Simão, RM Waterhouse, P Ioannidis, EV Kriventseva, EM Zdobnov
Bioinformatics 31 (19), 3210-3212, 2015
67462015
BUSCO applications from quality assessments to gene prediction and phylogenomics
RM Waterhouse, M Seppey, FA Simão, M Manni, P Ioannidis, ...
Molecular biology and evolution 35 (3), 543-548, 2018
14142018
OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
EM Zdobnov, F Tegenfeldt, D Kuznetsov, RM Waterhouse, FA Simão, ...
Nucleic acids research 45 (D1), D744-D749, 2017
3912017
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
EV Kriventseva, F Tegenfeldt, TJ Petty, RM Waterhouse, FA Simao, ...
Nucleic acids research 43 (D1), D250-D256, 2015
2702015
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle …
DD McKenna, ED Scully, Y Pauchet, K Hoover, R Kirsch, SM Geib, ...
Genome biology 17 (1), 1-18, 2016
2072016
Unique features of a global human ectoparasite identified through sequencing of the bed bug genome
JB Benoit, ZN Adelman, K Reinhardt, A Dolan, M Poelchau, EC Jennings, ...
Nature communications 7 (1), 1-10, 2016
1602016
Functional assays and metagenomic analyses reveals differences between the microbial communities inhabiting the soil horizons of a Norway spruce plantation
S Uroz, P Ioannidis, J Lengelle, A Cébron, E Morin, M Buee, F Martin
PLoS One 8 (2), e55929, 2013
1552013
A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor
C Zhao, LN Escalante, H Chen, TR Benatti, J Qu, S Chellapilla, ...
Current Biology 25 (5), 613-620, 2015
1542015
Gene content evolution in the arthropods
GWC Thomas, E Dohmen, DST Hughes, SC Murali, M Poelchau, ...
Genome biology 21 (1), 1-14, 2020
115*2020
Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and …
MA Hoy, RM Waterhouse, K Wu, AS Estep, P Ioannidis, WJ Palmer, ...
Genome biology and evolution 8 (6), 1762-1775, 2016
1052016
Extensive genomic diversity of closely related Wolbachia strains
N Ishmael, JCD Hotopp, P Ioannidis, S Biber, J Sakamoto, S Siozios, ...
Microbiology 155 (Pt 7), 2211, 2009
922009
The diversity and evolution of Wolbachia ankyrin repeat domain genes
S Siozios, P Ioannidis, L Klasson, SGE Andersson, HR Braig, K Bourtzis
PloS one 8 (2), e55390, 2013
882013
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
KA Panfilio, IM Vargas Jentzsch, JB Benoit, D Erezyilmaz, Y Suzuki, ...
Genome biology 20 (1), 1-26, 2019
762019
Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions
CA Anstead, PK Korhonen, ND Young, RS Hall, AR Jex, SC Murali, ...
Nature communications 6 (1), 1-11, 2015
762015
Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders
P Ioannidis, FA Simao, RM Waterhouse, M Manni, M Seppey, ...
Genome biology and evolution 9 (2), 415-430, 2017
532017
Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys
P Ioannidis, Y Lu, N Kumar, T Creasy, S Daugherty, MC Chibucos, J Orvis, ...
BMC genomics 15 (1), 1-22, 2014
462014
Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi
P Ioannidis, KL Johnston, DR Riley, N Kumar, JR White, KT Olarte, S Ott, ...
BMC genomics 14 (1), 1-17, 2013
452013
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
432016
Gene age predicts the strength of purifying selection acting on gene expression variation in humans
KY Popadin, M Gutierrez-Arcelus, T Lappalainen, A Buil, J Steinberg, ...
The American Journal of Human Genetics 95 (6), 660-674, 2014
432014
Wolbachia symbiosis and insect immune response
S Siozios, P Sapountzis, P Ioannidis, K Bourtzis
Insect Science 15 (1), 89-100, 2008
412008
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