Brooke E. Husic
Brooke E. Husic
PhD Student, Stanford University
Verified email at - Homepage
TitleCited byYear
MSMBuilder: statistical models for biomolecular dynamics
MP Harrigan, MM Sultan, CX Hernández, BE Husic, P Eastman, ...
Biophysical journal 112 (1), 10-15, 2017
Markov state models: From an art to a science
BE Husic, VS Pande
Journal of the American Chemical Society 140 (7), 2386-2396, 2018
Variational encoding of complex dynamics
CX Hernández, HK Wayment-Steele, MM Sultan, BE Husic, VS Pande
Physical Review E 97 (6), 062412, 2018
Identification of simple reaction coordinates from complex dynamics
RT McGibbon, BE Husic, VS Pande
The Journal of chemical physics 146 (4), 044109, 2017
Optimized parameter selection reveals trends in Markov state models for protein folding
BE Husic, RT McGibbon, MM Sultan, VS Pande
The Journal of chemical physics 145 (19), 194103, 2016
Ward clustering improves cross-validated Markov state models of protein folding
BE Husic, VS Pande
Journal of chemical theory and computation 13 (3), 963-967, 2017
Osprey: Hyperparameter Optimization for Machine Learning.
RT McGibbon, CX Hernández, MP Harrigan, SM Kearnes, MM Sultan, ...
J. Open Source Software 1 (5), 34, 2016
Potentialnet for molecular property prediction
EN Feinberg, D Sur, Z Wu, BE Husic, H Mai, Y Li, S Sun, J Yang, ...
ACS central science 4 (11), 1520-1530, 2018
Modeling the mechanism of CLN025 beta-hairpin formation
KA McKiernan, BE Husic, VS Pande
The Journal of chemical physics 147 (10), 104107, 2017
Impurity effects on solid–solid transitions in atomic clusters
BE Husic, D Schebarchov, DJ Wales
Nanoscale 8 (43), 18326-18340, 2016
A minimum variance clustering approach produces robust and interpretable coarse-grained models
BE Husic, KA McKiernan, HK Wayment-Steele, MM Sultan, VS Pande
Journal of chemical theory and computation 14 (2), 1071-1082, 2018
Variational selection of features for molecular kinetics
MK Scherer, BE Husic, M Hoffmann, F Paul, H Wu, F Noé
The Journal of chemical physics 150 (19), 194108, 2019
Introduction to Markov state modeling with the PyEMMA software—v1. 0
C Wehmeyer, MK Scherer, T Hempel, BE Husic, S Olsson, F Noé
LiveCoMS 1 (1), 1-12, 2018
Post-peninitial accent in Kashaya: An alternative to initial extrametricality
B Hyde, K Hofmeister, B Husic
Proceedings of the 29th West Coast Conference on Formal Linguistics, 117-124, 2012
Unsupervised learning of dynamical and molecular similarity using variance minimization
BE Husic, VS Pande
arXiv preprint arXiv:1712.07704, 2017
Note: MSM lag time cannot be used for variational model selection
BE Husic, VS Pande
The Journal of chemical physics 147 (17), 176101, 2017
Simultaneous coherent structure coloring facilitates interpretable clustering of scientific data by amplifying dissimilarity
BE Husic, KL Schlueter-Kuck, JO Dabiri
PloS one 14 (3), e0212442, 2019
Ancient Greek Accent Windows
B Hyde, B Husic
Dopant effects on solid-solid transitions in atomic clusters
BE Husic
University of Cambridge, 2015
Deflation reveals dynamical structure in nondominant reaction coordinates
BE Husic, F Noé
arXiv preprint arXiv:1907.04101, 2019
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Articles 1–20