| An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75-81, 2015 | 2442 | 2015 |
| Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ... Nature biotechnology 33 (2), 155-160, 2015 | 1259 | 2015 |
| Genetic drivers of epigenetic and transcriptional variation in human immune cells L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ... Cell 167 (5), 1398-1414. e24, 2016 | 681 | 2016 |
| Common genetic variation drives molecular heterogeneity in human iPSCs H Kilpinen, A Goncalves, A Leha, V Afzal, K Alasoo, S Ashford, S Bala, ... Nature 546 (7658), 370-375, 2017 | 610 | 2017 |
| DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, ... elife 4, e05255, 2015 | 501 | 2015 |
| Gaussian process prior variational autoencoders FP Casale, A Dalca, L Saglietti, J Listgarten, N Fusi Advances in neural information processing systems 31, 2018 | 142 | 2018 |
| A linear mixed-model approach to study multivariate gene–environment interactions R Moore, FP Casale, M Jan Bonder, D Horta, L Franke, I Barroso, ... Nature genetics 51 (1), 180-186, 2019 | 141 | 2019 |
| LIMIX: genetic analysis of multiple traits C Lippert, FP Casale, B Rakitsch, O Stegle BioRxiv, 003905, 2014 | 122 | 2014 |
| Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ... Genome biology 18, 1-17, 2017 | 118 | 2017 |
| Efficient set tests for the genetic analysis of correlated traits FP Casale, B Rakitsch, C Lippert, O Stegle Nature methods 12 (8), 755-758, 2015 | 115 | 2015 |
| Genetic variation in the social environment contributes to health and disease A Baud, MK Mulligan, FP Casale, JF Ingels, CJ Bohl, J Callebert, ... PLoS genetics 13 (1), e1006498, 2017 | 89 | 2017 |
| Probabilistic neural architecture search FP Casale, J Gordon, N Fusi arXiv preprint arXiv:1902.05116, 2019 | 86 | 2019 |
| Promoter shape varies across populations and affects promoter evolution and expression noise IE Schor, JF Degner, D Harnett, E Cannavň, FP Casale, H Shim, ... Nature genetics 49 (4), 550-558, 2017 | 72 | 2017 |
| Genetic variants regulating expression levels and isoform diversity during embryogenesis E Cannavň, N Koelling, D Harnett, D Garfield, FP Casale, L Ciglar, ... Nature 541 (7637), 402-406, 2017 | 63 | 2017 |
| The germline genetic component of drug sensitivity in cancer cell lines MP Menden, FP Casale, J Stephan, GR Bignell, F Iorio, U McDermott, ... Nature communications 9 (1), 3385, 2018 | 44 | 2018 |
| Joint genetic analysis using variant sets reveals polygenic gene-context interactions FP Casale, D Horta, B Rakitsch, O Stegle PLoS genetics 13 (4), e1006693, 2017 | 23 | 2017 |
| Interactions between genetic variation and cellular environment in skeletal muscle gene expression DL Taylor, DA Knowles, LJ Scott, AH Ramirez, FP Casale, BN Wolford, ... PLoS One 13 (4), e0195788, 2018 | 21 | 2018 |
| DNA methylation in MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, ... Arabidopsis, 2015 | 17 | 2015 |
| Dissecting indirect genetic effects from peers in laboratory mice A Baud, FP Casale, AM Barkley-Levenson, N Farhadi, C Montillot, ... Genome biology 22, 1-21, 2021 | 8 | 2021 |
| Predicting disease outcomes using machine learned models D Koller, A Kaykas, E Sharon, CGS Cotta-Ramusino, PF Palmedo, ... US Patent App. 17/350,761, 2021 | 8 | 2021 |
