Samuel A Isaacson
Samuel A Isaacson
Boston University, Department of Mathematics and Statistics
Verified email at - Homepage
Cited by
Cited by
Incorporating diffusion in complex geometries into stochastic chemical kinetics simulations
SA Isaacson, CS Peskin
SIAM Journal on Scientific Computing 28 (1), 47-74, 2006
The reaction-diffusion master equation as an asymptotic approximation of diffusion to a small target
SA Isaacson
SIAM Journal on Applied Mathematics 70 (1), 77-111, 2009
A convergent reaction-diffusion master equation
SA Isaacson
Journal of Chemical Physics 139 (5), 054101 (12pp), 2013
Reaction-diffusion master equation, diffusion-limited reactions, and singular potentials
SA Isaacson, D Isaacson
Physical Review E 80 (6), 066106, 2009
The influence of volume exclusion by chromatin on the time required to find specific DNA binding sites by diffusion
SA Isaacson, DM McQueen, CS Peskin
Proceedings of the National Academy of Sciences 108 (9), 3815-3820, 2011
Relationship between the reaction–diffusion master equation and particle tracking models
SA Isaacson
Journal of Physics A: Mathematical and Theoretical 41 (6), 065003, 2008
Imaging and characterizing cells using tomography
M Do, SA Isaacson, G McDermott, MA Le Gros, CA Larabell
Archives of biochemistry and biophysics 581, 111-121, 2015
A comparison of bimolecular reaction models for stochastic reaction–diffusion systems
IC Agbanusi, SA Isaacson
Bulletin of mathematical biology 76 (4), 922-946, 2014
Uniform asymptotic approximation of diffusion to a small target
SA Isaacson, J Newby
Physical Review E 88 (1), 012820 (13pp), 2013
Biophysical assay for tethered signaling reactions reveals tether-controlled activity for the phosphatase SHP-1
J Goyette, CS Salas, N Coker-Gordon, M Bridge, SA Isaacson, J Allard, ...
Science advances 3 (3), e1601692, 2017
Numerical solution of linear Volterra integral equations of the second kind with sharp gradients
SA Isaacson, RM Kirby
Journal of Computational and Applied Mathematics 235 (14), 4283-4301, 2011
A first-passage kinetic Monte Carlo method for reaction–drift–diffusion processes
AJ Mauro, JK Sigurdsson, J Shrake, PJ Atzberger, SA Isaacson
Journal of Computational Physics 259, 536-567, 2014
Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus
J Ma, M Do, MA Le Gros, CS Peskin, CA Larabell, Y Mori, SA Isaacson
PLoS computational biology 16 (11), e1008356, 2020
An unstructured mesh convergent reaction–diffusion master equation for reversible reactions
SA Isaacson, Y Zhang
Journal of Computational Physics 374, 954-983, 2018
Reactive boundary conditions as limits of interaction potentials for Brownian and Langevin dynamics
SJ Chapman, R Erban, SA Isaacson
SIAM Journal on Applied Mathematics 76 (1), 368-390, 2016
Mean field limits of particle-based stochastic reaction-diffusion models
SA Isaacson, J Ma, K Spiliopoulos
SIAM Journal on Mathematical Analysis 54 (1), 453-511, 2022
The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites
SA Isaacson, CA Larabell, MA Le Gros, DM McQueen, CS Peskin
Bulletin of mathematical biology 75, 2093-2117, 2013
The influence of molecular reach and diffusivity on the efficacy of membrane-confined reactions
Y Zhang, L Clemens, J Goyette, J Allard, O Dushek, SA Isaacson
Biophysical Journal 117 (7), 1189-1201, 2019
Modeling genetic circuit behavior in transiently transfected mammalian cells
J Wang, SA Isaacson, C Belta
ACS synthetic biology 8 (4), 697-707, 2019
Uniform asymptotic approximation of diffusion to a small target: Generalized reaction models
SA Isaacson, AJ Mauro, J Newby
Physical Review E 94 (4), 042414, 2016
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