Martin Hunt
Martin Hunt
Nuffield Department of Medicine, University of Oxford / European Bioinformatics Institute
Verified email at ebi.ac.uk
TitleCited byYear
Roary: rapid large-scale prokaryote pan genome analysis
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
6502015
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 10, 2013
4982013
REAPR: a universal tool for genome assembly evaluation
M Hunt, T Kikuchi, M Sanders, C Newbold, M Berriman, TD Otto
Genome biology 14 (5), R47, 2013
2792013
A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni
AV Protasio, IJ Tsai, A Babbage, S Nichol, M Hunt, MA Aslett, N De Silva, ...
PLoS neglected tropical diseases 6 (1), e1455, 2012
2742012
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus
T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ...
PLoS pathogens 7 (9), e1002219, 2011
2552011
Circlator: automated circularization of genome assemblies using long sequencing reads
M Hunt, N De Silva, TD Otto, J Parkhill, JA Keane, SR Harris
Genome biology 16 (1), 294, 2015
2042015
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery
R Laing, T Kikuchi, A Martinelli, IJ Tsai, RN Beech, E Redman, N Holroyd, ...
Genome biology 14 (8), R88, 2013
1802013
A comprehensive evaluation of assembly scaffolding tools
M Hunt, C Newbold, M Berriman, TD Otto
Genome biology 15 (3), R42, 2014
1502014
A comprehensive evaluation of rodent malaria parasite genomes and gene expression
TD Otto, U Böhme, AP Jackson, M Hunt, B Franke-Fayard, ...
BMC biology 12 (1), 86, 2014
1462014
The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode
JA Cotton, CJ Lilley, LM Jones, T Kikuchi, AJ Reid, P Thorpe, IJ Tsai, ...
Genome biology 15 (3), R43, 2014
1332014
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
AJ Page, N De Silva, M Hunt, MA Quail, J Parkhill, SR Harris, TD Otto, ...
Microbial genomics 2 (8), 2016
792016
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ...
Microbial genomics 3 (10), 2017
742017
IVA: accurate de novo assembly of RNA virus genomes
M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ...
Bioinformatics 31 (14), 2374-2376, 2015
702015
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
AD Winter, W Weir, M Hunt, M Berriman, JS Gilleard, E Devaney, C Britton
BMC genomics 13 (1), 4, 2012
542012
Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes
GI Saunders, JD Wasmuth, R Beech, R Laing, M Hunt, H Naghra, ...
International journal for parasitology 43 (6), 465-475, 2013
372013
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes
SC Forster, HP Browne, N Kumar, M Hunt, H Denise, A Mitchell, RD Finn, ...
Nucleic acids research 44 (D1), D604-D609, 2015
312015
A phylogenetic and phenotypic analysis of Salmonella enterica serovar Weltevreden, an emerging agent of diarrheal disease in tropical regions
C Makendi, AJ Page, BW Wren, TLT Phuong, S Clare, C Hale, D Goulding, ...
PLoS neglected tropical diseases 10 (2), e0004446, 2016
262016
Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology
K Judge, M Hunt, S Reuter, A Tracey, MA Quail, J Parkhill, SJ Peacock
Microbial genomics 2 (9), 2016
242016
Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans
R Laing, M Hunt, AV Protasio, G Saunders, K Mungall, S Laing, F Jackson, ...
PLoS One 6 (8), e23216, 2011
162011
Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA
IJ Tsai, M Hunt, N Holroyd, T Huckvale, M Berriman, T Kikuchi
DNA Research 21 (3), 243-254, 2013
132013
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