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Martin Hunt
Martin Hunt
Nuffield Department of Medicine, University of Oxford / European Bioinformatics Institute
Verified email at ebi.ac.uk
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Cited by
Year
Roary: rapid large-scale prokaryote pan genome analysis
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
24912015
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 2047-217X-2-10, 2013
7002013
Circlator: automated circularization of genome assemblies using long sequencing reads
M Hunt, N De Silva, TD Otto, J Parkhill, JA Keane, SR Harris
Genome biology 16 (1), 1-10, 2015
5962015
A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni
AV Protasio, IJ Tsai, A Babbage, S Nichol, M Hunt, MA Aslett, N De Silva, ...
PLoS neglected tropical diseases 6 (1), e1455, 2012
4192012
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ...
Microbial genomics 3 (10), 2017
4052017
REAPR: a universal tool for genome assembly evaluation
M Hunt, T Kikuchi, M Sanders, C Newbold, M Berriman, TD Otto
Genome biology 14 (5), 1-10, 2013
4022013
Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ...
PLoS pathogens 7 (9), e1002219, 2011
3792011
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery
R Laing, T Kikuchi, A Martinelli, IJ Tsai, RN Beech, E Redman, N Holroyd, ...
Genome biology 14 (8), 1-16, 2013
2932013
A comprehensive evaluation of rodent malaria parasite genomes and gene expression
TD Otto, U Böhme, AP Jackson, M Hunt, B Franke-Fayard, ...
BMC biology 12 (1), 1-18, 2014
2462014
Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing
CRyPTIC Consortium and the 100,000 Genomes Project
New England Journal of Medicine 379 (15), 1403-1415, 2018
2122018
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
AJ Page, N De Silva, M Hunt, MA Quail, J Parkhill, SR Harris, TD Otto, ...
Microbial genomics 2 (8), 2016
2092016
The genome and life-stage specific transcriptomes of Globodera pallidaelucidate key aspects of plant parasitism by a cyst nematode
JA Cotton, CJ Lilley, LM Jones, T Kikuchi, AJ Reid, P Thorpe, IJ Tsai, ...
Genome biology 15 (3), 1-17, 2014
2052014
A comprehensive evaluation of assembly scaffolding tools
M Hunt, C Newbold, M Berriman, TD Otto
Genome biology 15 (3), 1-15, 2014
2002014
IVA: accurate de novo assembly of RNA virus genomes
M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ...
Bioinformatics 31 (14), 2374-2376, 2015
1592015
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
AD Winter, W Weir, M Hunt, M Berriman, JS Gilleard, E Devaney, C Britton
BMC genomics 13 (1), 1-19, 2012
732012
Inferring synteny between genome assemblies: a systematic evaluation
D Liu, M Hunt, IJ Tsai
BMC bioinformatics 19 (1), 1-13, 2018
642018
Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes
GI Saunders, JD Wasmuth, R Beech, R Laing, M Hunt, H Naghra, ...
International journal for parasitology 43 (6), 465-475, 2013
622013
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes
SC Forster, HP Browne, N Kumar, M Hunt, H Denise, A Mitchell, RD Finn, ...
Nucleic acids research 44 (D1), D604-D609, 2016
592016
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe
M Hunt, P Bradley, SG Lapierre, S Heys, M Thomsit, MB Hall, KM Malone, ...
Wellcome open research 4, 2019
532019
A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions
C Makendi, AJ Page, BW Wren, T Le Thi Phuong, S Clare, C Hale, ...
PLoS neglected tropical diseases 10 (2), e0004446, 2016
532016
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