| Nuclear pore complex: biochemistry and biophysics of nucleocytoplasmic transport in health and disease T Jamali, Y Jamali, M Mehrbod, MRK Mofrad International review of cell and molecular biology 287, 233-286, 2011 | 106 | 2011 |
| Brownian dynamics simulation of nucleocytoplasmic transport: a coarse-grained model for the functional state of the nuclear pore complex R Moussavi-Baygi, Y Jamali, R Karimi, MRK Mofrad PLoS computational biology 7 (6), e1002049, 2011 | 79 | 2011 |
| The concepts and applications of fractional order differential calculus in modeling of viscoelastic systems: a primer MA Matlob, Y Jamali Critical Reviews™ in Biomedical Engineering 47 (4), 2019 | 77 | 2019 |
| A sub-cellular viscoelastic model for cell population mechanics Y Jamali, M Azimi, MRK Mofrad PLoS One 5 (8), e12097, 2010 | 75 | 2010 |
| Influence of Global and Local Membrane Curvature on Mechanosensitive Ion Channels: A Finite Element Approach O Bavi, CD Cox, M Vossoughi, R Naghdabadi, Y Jamali, B Martinac Membranes 6 (1), 2016 | 53 | 2016 |
| Biophysical coarse-grained modeling provides insights into transport through the nuclear pore complex R Moussavi-Baygi, Y Jamali, R Karimi, MRK Mofrad Biophysical journal 100 (6), 1410-1419, 2011 | 46 | 2011 |
| An agent based model of integrin clustering: Exploring the role of ligand clustering, integrin homo-oligomerization, integrin–ligand affinity, membrane crowdedness and ligand … Y Jamali, T Jamali, MRK Mofrad Journal of Computational Physics 244, 264-278, 2013 | 36 | 2013 |
| Accounting for diffusion in agent based models of reaction-diffusion systems with application to cytoskeletal diffusion M Azimi, Y Jamali, MRK Mofrad PLoS One 6 (9), e25306, 2011 | 31 | 2011 |
| WCOACH: Protein complex prediction in weighted PPI networks M Kouhsar, F Zare-Mirakabad, Y Jamali Genes & genetic systems, 15-00032, 2016 | 28 | 2016 |
| Computational modelling of the stochastic dynamics of kinesin biomolecular motors Y Jamali, A Lohrasebi, H Rafii-Tabar Physica A: Statistical Mechanics and its Applications 381, 239-254, 2007 | 27 | 2007 |
| The combined effect of hydrophobic mismatch and bilayer local bending on the regulation of mechanosensitive ion channels O Bavi, M Vossoughi, R Naghdabadi, Y Jamali PloS one 11 (3), e0150578, 2016 | 23 | 2016 |
| Computational modeling of a rotary nanopump A Lohrasebi, Y Jamali Journal of Molecular Graphics and Modelling 29 (8), 1025-1029, 2011 | 20 | 2011 |
| Nanomechanical properties of MscL alpha helices: A steered molecular dynamics study YJ N. Bavi, O. Bavi, M. Vossoughi, R. Naghdabadi, A.P. Hill, B. Martinac Channels 11 (3), 209-223, 2017 | 19 | 2017 |
| The effect of local bending on gating of MscL using a representative volume element and finite element simulation O Bavi, M Vossoughi, R Naghdabadi, Y Jamali Channels 8 (4), 344-349, 2014 | 17 | 2014 |
| Modeling the effect of external electric field and current on the stochastic dynamics of ATPase nano-biomolecular motors A Lohrasebi, Y Jamali, H Rafii-Tabar Physica A: Statistical Mechanics and its Applications 387 (22), 5466-5476, 2008 | 13 | 2008 |
| A proposed mechanism for mind-brain interaction using extended Bohmian quantum mechanics in Avicenna's monotheistic perspective M Jamali, M Golshani, Y Jamali Heliyon 5 (7), e02130, 2019 | 8 | 2019 |
| Modeling ion permeation through a bacterial voltage-gated calcium channel Ca V Ab using molecular dynamics simulations J Adiban, Y Jamali, H Rafii-Tabar Molecular BioSystems 13 (1), 208-214, 2017 | 7 | 2017 |
| Multi-scale simulation of carbon nanotubes interactions with cell membrane: DFT calculations and molecular dynamic simulation SH Tabari, Y Jamali, R Poursalehi Procedia Materials Science 11, 423-427, 2015 | 7 | 2015 |
| On the influence of structural connectivity on the correlation patterns and network synchronization PS Nazemi, Y Jamali Frontiers in computational neuroscience 12, 105, 2019 | 6 | 2019 |
| Structural and functional effect of an oscillating electric field on the Dopamine-D3 receptor: A molecular dynamics simulation study Z Fallah, Y Jamali, H Rafii-Tabar PloS one 11 (11), e0166412, 2016 | 5 | 2016 |
Mohammad Reza Kaazempur MofradProfessor of Bioengineering and Mechanical Engineering, University of California BerkeleyVerified email at berkeley.edu
