| Amber 2021 DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ... University of California, San Francisco, 2021 | 5148 | 2021 |
| Evaluation of acridine orange, LysoTracker Red, and quinacrine as fluorescent probes for long‐term tracking of acidic vesicles A Pierzyńska‐Mach, PA Janowski, JW Dobrucki Cytometry Part A 85 (8), 729-737, 2014 | 284 | 2014 |
| The FF14SB force field DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... Amber 14, 29-31, 2014 | 243 | 2014 |
| AMBER 2018, University of California, San Francisco, 2018 DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, ... Google Scholar There is no corresponding record for this reference, 2015 | 242 | 2015 |
| AMBER 14; University of California: San Francisco, 2014 DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... Google Scholar There is no corresponding record for this reference, 1-826, 2014 | 238 | 2014 |
| AmberTools 16 DA Case, RM Betz, W Botello-Smith, DS Cerutti, TE Cheatham III, ... University of California, San Francisco, 2016 | 141 | 2016 |
| Rationale for the real‐time and dynamic cell death assays using propidium iodide H Zhao, J Oczos, P Janowski, D Trembecka, J Dobrucki, Z Darzynkiewicz, ... Cytometry Part A: The Journal of the International Society for Advancement …, 2010 | 68 | 2010 |
| AMBER 2016 RE Duke, TJ Giese, H Gohlke, AW Goetz, N Homeyer, S Izadi, P Janowski, ... University of California, San Francisco 1 (3), 2016 | 58 | 2016 |
| Molecular dynamics simulation of triclinic lysozyme in a crystal lattice PA Janowski, C Liu, J Deckman, DA Case Protein science 25 (1), 87-102, 2016 | 58 | 2016 |
| Peptide crystal simulations reveal hidden dynamics PA Janowski, DS Cerutti, J Holton, DA Case Journal of the American Chemical Society 135 (21), 7938-7948, 2013 | 52 | 2013 |
| Evidence for the role of active site residues in the hairpin ribozyme from molecular simulations along the reaction path H Heldenbrand, PA Janowski, G Giambaşu, TJ Giese, JE Wedekind, ... Journal of the American Chemical Society 136 (22), 7789-7792, 2014 | 40 | 2014 |
| Improved ligand geometries in crystallographic refinement using AFITT in PHENIX PA Janowski, NW Moriarty, BP Kelley, DA Case, DM York, PD Adams, ... Acta Crystallographica Section D: Structural Biology 72 (9), 1062-1072, 2016 | 30 | 2016 |
| Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix NW Moriarty, PA Janowski, JM Swails, H Nguyen, JS Richardson, ... Acta Crystallographica Section D: Structural Biology 76 (1), 51-62, 2020 | 29 | 2020 |
| Walker DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... Wang, J, 18 | 29 | 18 |
| AMBER 142014University of California DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... San Francisco, 0 | 26 | |
| ParmEd J Swails, C Hernandez, DL Mobley, H Nguyen, LP Wang, P Janowski URL: https://github. com/ParmEd/ParmEd, 2010 | 25 | 2010 |
| All-atom crystal simulations of DNA and RNA duplexes C Liu, PA Janowski, DA Case Biochimica et Biophysica Acta (BBA)-General Subjects 1850 (5), 1059-1071, 2015 | 24 | 2015 |
| AMBER 14 Univ DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... California, San Fr, 2014 | 12 | 2014 |
| ParmEd: Cross-program parameter and topology file editor and molecular mechanical simulator engine J Swails, C Hernandez, D Mobley, H Nguyen, L Wang, P Janowski Available at parmed. github. io/ParmEd/html/index. html. Accessed December 5, 2016 | 10 | 2016 |
| ParmEd; 2010 J Swails, C Hernandez, DL Mobley, H Nguyen, LP Wang, P Janowski Google Scholar There is no corresponding record for this reference, 0 | 8 | |
David CeruttiRutgersVerified email at rutgers.edu
