| Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation H Dueck, M Khaladkar, TK Kim, JM Spaethling, C Francis, S Suresh, ... Genome biology 16, 1-17, 2015 | 95 | 2015 |
| Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis PT Buckley, M Khaladkar, J Kim, J Eberwine Wiley Interdisciplinary Reviews: RNA 5 (2), 223-230, 2014 | 89 | 2014 |
| Control of cytokinesis by β-adrenergic receptors indicates an approach for regulating cardiomyocyte endowment H Liu, CH Zhang, N Ammanamanchi, S Suresh, C Lewarchik, K Rao, ... Science translational medicine 11 (513), eaaw6419, 2019 | 85 | 2019 |
| Primary cell culture of live neurosurgically resected aged adult human brain cells and single cell transcriptomics JM Spaethling, YJ Na, J Lee, AV Ulyanova, GH Baltuch, TJ Bell, S Brem, ... Cell reports 18 (3), 791-803, 2017 | 78 | 2017 |
| The exonuclease Nibbler regulates age‐associated traits and modulates piRNA length in Drosophila VL Feltzin, M Khaladkar, M Abe, M Parisi, GJ Hendriks, J Kim, NM Bonini Aging cell 14 (3), 443-452, 2015 | 69 | 2015 |
| Lamin B2 levels regulate polyploidization of cardiomyocyte nuclei and myocardial regeneration LU Han, S Choudhury, JD Mich-Basso, N Ammanamanchi, B Ganapathy, ... Developmental cell 53 (1), 42-59. e11, 2020 | 66 | 2020 |
| Applications of single-cell RNA sequencing in drug discovery and development B Van de Sande, JS Lee, E Mutasa-Gottgens, B Naughton, W Bacon, ... Nature Reviews Drug Discovery 22 (6), 496-520, 2023 | 59 | 2023 |
| Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons M Khaladkar, PT Buckley, MT Lee, C Francis, MM Eghbal, T Chuong, ... PloS one 8 (10), e76194, 2013 | 46 | 2013 |
| RADAR: a web server for RNA data analysis and research M Khaladkar, V Bellofatto, JTL Wang, B Tian, BA Shapiro Nucleic acids research 35 (suppl_2), W300-W304, 2007 | 37 | 2007 |
| PIVOT: platform for interactive analysis and visualization of transcriptomics data Q Zhu, SA Fisher, H Dueck, S Middleton, M Khaladkar, J Kim BMC bioinformatics 19, 1-8, 2018 | 35 | 2018 |
| Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution C Francis, S Natarajan, MT Lee, M Khaladkar, PT Buckley, JY Sul, ... BMC genomics 15, 1-18, 2014 | 31 | 2014 |
| Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment M Khaladkar, J Liu, D Wen, JTL Wang, B Tian BMC genomics 9, 1-12, 2008 | 24 | 2008 |
| Epigenomic and RNA structural correlates of polyadenylation M Khaladkar, M Smyda, S Hannenhalli RNA biology 8 (3), 529-537, 2011 | 21 | 2011 |
| Detecting conserved secondary structures in RNA molecules using constrained structural alignment M Khaladkar, V Patel, V Bellofatto, J Wilusz, JTL Wang Computational biology and chemistry 32 (4), 264-272, 2008 | 10 | 2008 |
| Functional divergence of gene duplicates–a domain-centric view M Khaladkar, S Hannenhalli BMC Evolutionary Biology 12, 1-10, 2012 | 7 | 2012 |
| RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research M Khaladkar, V Bellofatto, JTL Wang, B Tian, K Zhang Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06), 209-212, 2006 | 6 | 2006 |
| A method for discovering common patterns from two RNA secondary structures and its application to structural repeat detection L Hua, JTL Wang, X Ji, A Malhotra, M Khaladkar, BA Shapiro, K Zhang Journal of bioinformatics and computational biology 10 (04), 1250001, 2012 | 4 | 2012 |
| Decreased Expression of Lamin B2 Induces Polyploidization of Cardiomyocyte Nuclei and Induces Cell Cycle Withdrawal L Han, S Choudhury, JD Mich-Basso, B Ganapathy, N Ammanamanchi, ... Circulation 140 (Suppl_1), A15816-A15816, 2019 | | 2019 |
| Identification of novel cancer target genes by combining data from the cancer genome-wide association studies (GWAS), regulatory DNA elements and The Cancer Genome Atlas (TCGA) DA Kulkarni, K Guo, J Jing, M Khaladkar, K Song, C Dong, D Cooper, ... Cancer Research 78 (13_Supplement), 236-236, 2018 | | 2018 |
| Identification and validation of synthetic lethal cancer pairs from genome-wide CRISPR screens B Schwartz, J Jing, E Stronach, D Cooper, B Wilson, S Middleton, ... Cancer Research 78 (13_Supplement), 2344-2344, 2018 | | 2018 |
