Amyloidogenic determinants are usually not buried KK Frousios, VA Iconomidou, CM Karletidi, SJ Hamodrakas BMC structural biology 9, 1-9, 2009 | 166 | 2009 |
Predicting the functional consequences of non-synonymous DNA sequence variants—evaluation of bioinformatics tools and development of a consensus strategy K Frousios, CS Iliopoulos, T Schlitt, MA Simpson Genomics 102 (4), 223-228, 2013 | 131 | 2013 |
Isolating live cell clones from barcoded populations using CRISPRa-inducible reporters C Umkehrer, F Holstein, L Formenti, J Jude, K Froussios, T Neumann, ... Nature Biotechnology 39 (2), 174-178, 2021 | 69 | 2021 |
REAL: an efficient REad ALigner for next generation sequencing reads K Frousios, CS Iliopoulos, L Mouchard, SP Pissis, G Tischler Proceedings of the First ACM International Conference on Bioinformatics and …, 2010 | 40 | 2010 |
Relative abundance of transcripts (RATs): identifying differential isoform abundance from RNA-seq K Froussios, K Mourão, G Simpson, G Barton, N Schurch F1000Research 8, 2019 | 20 | 2019 |
GapMis: a tool for pairwise sequence alignment with a single gap T Flouri, K Frousios, C S Iliopoulos, K Park, S P Pissis, G Tischler Recent Patents on DNA & Gene Sequences (Discontinued) 7 (2), 84-95, 2013 | 13 | 2013 |
Detection and mitigation of spurious antisense expression with RoSA K Mourão, NJ Schurch, R Lucoszek, K Froussios, K MacKinnon, C Duc, ... F1000Research 8, 819, 2019 | 12 | 2019 |
Detection and mitigation of spurious antisense expression with RoSA K Mourão, NJ Schurch, R Lucoszek, K Froussios, K MacKinnon, C Duc, ... F1000Research 8, 819, 2019 | 12 | 2019 |
Approximate string-matching with a single gap for sequence alignment T Flouri, K Park, K Frousios, SP Pissis, CS Iliopoulos, G Tischler Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011 | 11 | 2011 |
Identifying differential isoform abundance with RATs: a universal tool and a warning K Froussios, K Mourão, GG Simpson, GJ Barton, NJ Schurch BioRxiv, 132761, 2017 | 9 | 2017 |
Transcriptome map of mouse isochores S Arhondakis, K Frousios, CS Iliopoulos, SP Pissis, G Tischler, S Kossida BMC genomics 12, 1-9, 2011 | 9 | 2011 |
How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana K Froussios, NJ Schurch, K Mackinnon, M Gierliński, C Duc, GG Simpson, ... Bioinformatics 35 (18), 3372-3377, 2019 | 8 | 2019 |
How well do RNA-Seq differential gene expression tools perform in a eukaryote with a complex transcriptome? K Froussios, NJ Schurch, K Mackinnon, M Gierliński, C Duc, GG Simpson, ... bioRxiv, 090753, 2016 | 6 | 2016 |
Transcriptome map of mouse isochores in embryonic and neonatal cortex K Frousios, CS Iliopoulos, G Tischler, S Kossida, SP Pissis, S Arhondakis Genomics 101 (2), 120-124, 2013 | 6 | 2013 |
How well do RNA-Seq differential gene expression tools perform in a eukaryote with a complex transcriptome? bioRxiv. 2017 K Froussios, NJ Schurch, K Mackinnon Publisher Full Text, 0 | 6 | |
HUWE1 controls tristetraprolin proteasomal degradation by regulating its phosphorylation S Scinicariello, A Soderholm, M Schäfer, A Shulkina, I Schwartz, K Hacker, ... Elife 12, e83159, 2023 | 2 | 2023 |
SPOP targets the immune transcription factor IRF1 for proteasomal degradation I Schwartz, M Vunjak, V Budroni, AC García, M Mastrovito, A Soderholm, ... Elife 12, e89951, 2023 | 1 | 2023 |
Somatic hypermutation patterns in immunoglobulin variable regions are established independently of the local transcriptional landscape UE Schoeberl, J Fitz, K Froussios, R Valieris, I Ourailidis, M Makharova, ... | 1 | 2022 |
Detection and Mitigation of Spurious Antisense Reads with RoSA K Mourão, NJ Schurch, R Lucoszek, K Froussios, K MacKinnon, C Duc, ... bioRxiv, 425900, 2018 | 1 | 2018 |
SPOP targets the immune transcription factor IRF1 for proteasomal degradation M Vunjak, I Schwartz, A Cantoran García, M Mastrovito, M Hinterndorfer, ... bioRxiv, 2022.10. 10.511567, 2022 | | 2022 |