Panayiotis (Takis) Benos
Panayiotis (Takis) Benos
Professor of Computational and Systems Biology
Verified email at pitt.edu - Homepage
Title
Cited by
Cited by
Year
The genome sequence of Drosophila melanogaster
MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, ...
Science 287 (5461), 2185-2195, 2000
73712000
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167-177, 2007
7082007
STAMP: a web tool for exploring DNA-binding motif similarities
S Mahony, PV Benos
Nucleic acids research 35 (suppl_2), W253-W258, 2007
5082007
Inhibition and role of let-7d in idiopathic pulmonary fibrosis
KV Pandit, D Corcoran, H Yousef, M Yarlagadda, A Tzouvelekis, ...
American journal of respiratory and critical care medicine 182 (2), 220-229, 2010
4802010
Mesenchymal glioma stem cells are maintained by activated glycolytic metabolism involving aldehyde dehydrogenase 1A3
P Mao, K Joshi, J Li, SH Kim, P Li, L Santana-Santos, S Luthra, ...
Proceedings of the National Academy of Sciences 110 (21), 8644-8649, 2013
4592013
Additivity in protein–DNA interactions: how good an approximation is it?
PV Benos, ML Bulyk, GD Stormo
Nucleic acids research 30 (20), 4442-4451, 2002
4192002
Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data
DL Corcoran, KV Pandit, B Gordon, A Bhattacharjee, N Kaminski, ...
PloS one 4 (4), e5279, 2009
3512009
enoLOGOS: a versatile web tool for energy normalized sequence logos
CT Workman, Y Yin, DL Corcoran, T Ideker, GD Stormo, PV Benos
Nucleic acids research 33 (suppl_2), W389-W392, 2005
2522005
P-Element Insertion Alleles of Essential Genes on the Third Chromosome of Drosophila melanogaster Correlation of Physical and Cytogenetic Maps in …
P Deák, MM Omar, RDC Saunders, M Pál, O Komonyi, J Szidonya, ...
Genetics 147 (4), 1697-1722, 1997
1901997
Profibrotic role of miR-154 in pulmonary fibrosis
J Milosevic, K Pandit, M Magister, E Rabinovich, DC Ellwanger, G Yu, ...
American journal of respiratory cell and molecular biology 47 (6), 879-887, 2012
1802012
ComiR: combinatorial microRNA target prediction tool
C Coronnello, PV Benos
Nucleic acids research 41 (W1), W159-W164, 2013
1632013
Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex
K Belov, JE Deakin, AT Papenfuss, ML Baker, SD Melman, HV Siddle, ...
PLoS Biol 4 (3), e46, 2006
1532006
Probabilistic code for DNA recognition by proteins of the EGR family
PV Benos, AS Lapedes, GD Stormo
Journal of molecular biology 323 (4), 701-727, 2002
1432002
DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies
S Mahony, PE Auron, PV Benos
PLoS Comput Biol 3 (3), e61, 2007
1412007
Is there a code for protein–DNA recognition? Probab (ilistical) ly…
PV Benos, AS Lapedes, GD Stormo
Bioessays 24 (5), 466-475, 2002
1412002
Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma
H Feng, JL Taylor, PV Benos, R Newton, K Waddell, SB Lucas, Y Chang, ...
Journal of virology 81 (20), 11332-11340, 2007
1252007
mirConnX: condition-specific mRNA-microRNA network integrator
GT Huang, C Athanassiou, PV Benos
Nucleic acids research 39 (suppl_2), W416-W423, 2011
1212011
Mapping and identification of essential gene functions on the X chromosome of Drosophila
A Peter, P Schöttler, M Werner, N Beinert, G Dowe, P Burkert, F Mourkioti, ...
EMBO reports 3 (1), 34-38, 2002
1212002
HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models
S Kadri, V Hinman, PV Benos
BMC bioinformatics 10 (1), 1-12, 2009
1072009
Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis
C Morse, T Tabib, J Sembrat, KL Buschur, HT Bittar, E Valenzi, Y Jiang, ...
European Respiratory Journal 54 (2), 2019
1012019
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