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Vivak Soni
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A new test suggests hundreds of amino acid polymorphisms in humans are subject to balancing selection
V Soni, M Vos, A Eyre-Walker
PLoS Biology 20 (6), e3001645, 2022
132022
Evaluating power to detect recurrent selective sweeps under increasingly realistic evolutionary null models
V Soni, P Johri, JD Jensen
Evolution 77 (10), 2113-2127, 2023
112023
Developing an appropriate evolutionary baseline model for the study of SARS-CoV-2 patient samples
JW Terbot, P Johri, SW Liphardt, V Soni, SP Pfeifer, BS Cooper, JM Good, ...
PLoS Pathogens 19 (4), e1011265, 2023
112023
The effects of mutation and recombination rate heterogeneity on the inference of demography and the distribution of fitness effects
V Soni, SP Pfeifer, JD Jensen
Genome biology and evolution 16 (2), evae004, 2024
102024
Developing an appropriate evolutionary baseline model for the study of human cytomegalovirus
AA Howell, JW Terbot, V Soni, P Johri, JD Jensen, SP Pfeifer
Genome biology and evolution 15 (4), evad059, 2023
82023
Inferring the Demographic History of Aye-Ayes (Daubentonia madagascariensis) from High-Quality, Whole-Genome, Population-Level Data
JW Terbot, V Soni, CJ Versoza, SP Pfeifer, JD Jensen
Genome Biology and Evolution 17 (1), evae281, 2025
72025
Inferring demographic and selective histories from population genomic data using a two-step approach in species with coding-sparse genomes: an application to human data
V Soni, JD Jensen
G3: Genes, Genomes, Genetics, jkaf019, 2025
62025
A whole-genome scan for evidence of recent positive and balancing selection in aye-ayes (Daubentonia madagascariensis) utilizing a well-fit evolutionary baseline model
V Soni, JW Terbot, CJ Versoza, SP Pfeifer, JD Jensen
BioRxiv, 2024.11. 08.622667, 2024
52024
Temporal challenges in detecting balancing selection from population genomic data
V Soni, JD Jensen
G3: Genes, Genomes, Genetics, jkae069, 2024
42024
Factors That Affect the Rates of Adaptive and Nonadaptive Evolution at the Gene Level in Humans and Chimpanzees
V Soni, A Eyre-Walker
Genome Biology and Evolution 14 (2), evac028, 2022
32022
Reply to: Population genetic considerations regarding the interpretation of within-patient SARS-CoV-2 polymorphism data
CW Nelson, LLM Poon, H Gu
Nature communications 15 (1), 3239, 2024
22024
Changing Population Size in McDonald–Kreitman Style Analyses: Artifactual Correlations and Adaptive Evolution between Humans and Chimpanzees
V Soni, AF Moutinho, A Eyre-Walker
Genome Biology and Evolution 14 (2), evac022, 2022
22022
Interpreting patterns of X chromosomal relative to autosomal diversity in aye-ayes (Daubentonia madagascariensis)
JW Terbot, V Soni, CJ Versoza, M Milhaven, A Calahorra-Oliart, D Shah, ...
bioRxiv, 2025.01. 25.634876, 2025
2025
Estimating the distribution of fitness effects in aye-ayes (Daubentonia madagascariensis), accounting for population history as well as mutation and recombination …
V Soni, CJ Versoza, SP Pfeifer, JD Jensen
bioRxiv, 2025.01. 02.631144, 2025
2025
Inferring fine-scale mutation and recombination rate maps in aye-ayes (Daubentonia madagascariensis)
V Soni, CJ Versoza, JW Terbot, JD Jensen, SP Pfeifer
bioRxiv, 2024.12. 28.630620, 2024
2024
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