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Aleksey V Zimin
Aleksey V Zimin
Associate Research Scientist, Department of Biomedical Engineering, Johns Hopkins Unviersity
Verified email at jhu.edu - Homepage
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, L Pachter
Nature 450 (7167), 203-218, 2007
20632007
A whole-genome assembly of the domestic cow, Bos taurus
AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ...
Genome biology 10 (4), 1-10, 2009
12602009
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
Nature 487 (7405), 94-98, 2012
10752012
The MaSuRCA genome assembler
AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke
Bioinformatics 29 (21), 2669-2677, 2013
10262013
A local ensemble Kalman filter for atmospheric data assimilation
E Ott, BR Hunt, I Szunyogh, AV Zimin, EJ Kostelich, M Corazza, E Kalnay, ...
Tellus A: Dynamic Meteorology and Oceanography 56 (5), 415-428, 2004
9642004
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
8062012
MUMmer4: A fast and versatile genome alignment system
G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin
PLoS computational biology 14 (1), e1005944, 2018
7882018
The Atlantic salmon genome provides insights into rediploidization
S Lien, BF Koop, SR Sandve, JR Miller, MP Kent, T Nome, TR Hvidsten, ...
Nature 533 (7602), 200-205, 2016
7802016
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ...
Genome biology 15 (3), 1-13, 2014
4882014
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
4362010
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome biology 20 (1), 1-13, 2019
4352019
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
MC Luo, YQ Gu, D Puiu, H Wang, SO Twardziok, KR Deal, N Huo, T Zhu, ...
Nature 551 (7681), 498-502, 2017
4242017
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)
CD Smith, A Zimin, C Holt, E Abouheif, R Benton, E Cash, V Croset, ...
Proceedings of the National Academy of Sciences 108 (14), 5673-5678, 2011
3342011
Sequencing and assembly of the 22-Gb loblolly pine genome
A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ...
Genetics 196 (3), 875-890, 2014
3262014
Draft genome of the red harvester ant Pogonomyrmex barbatus
CR Smith, CD Smith, HM Robertson, M Helmkampf, A Zimin, M Yandell, ...
Proceedings of the National Academy of Sciences 108 (14), 5667-5672, 2011
3192011
Four-dimensional ensemble Kalman filtering
BR Hunt, E Kalnay, EJ Kostelich, E Ott, DJ Patil, T Sauer, I Szunyogh, ...
Tellus A: Dynamic Meteorology and Oceanography 56 (4), 273-277, 2004
2942004
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ...
Genome research 27 (5), 787-792, 2017
2772017
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts
Z Liu, S Liu, J Yao, L Bao, J Zhang, Y Li, C Jiang, L Sun, R Wang, ...
Nature communications 7 (1), 1-13, 2016
2462016
The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
AV Zimin, D Puiu, R Hall, S Kingan, BJ Clavijo, SL Salzberg
Gigascience 6 (11), gix097, 2017
2412017
De novo assembly of the cattle reference genome with single-molecule sequencing
BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ...
Gigascience 9 (3), giaa021, 2020
2212020
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