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Jacqueline A. Keane
Jacqueline A. Keane
Pathogen Genomics IT Consultant
Verified email at cambridgebioinformatics.com - Homepage
Title
Cited by
Cited by
Year
Roary: rapid large-scale prokaryote pan genome analysis
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
41452015
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
19472015
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan
Bioinformatics 28 (4), 464-469, 2012
11852012
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ...
Microbial genomics 2 (4), e000056, 2016
10112016
Circlator: automated circularization of genome assemblies using long sequencing reads
M Hunt, ND Silva, TD Otto, J Parkhill, JA Keane, SR Harris
Genome biology 16, 1-10, 2015
8942015
The genomes of four tapeworm species reveal adaptations to parasitism
IJ Tsai, M Zarowiecki, N Holroyd, A Garciarrubio, A Sanchez-Flores, ...
Nature 496 (7443), 57-63, 2013
7532013
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ...
Microbial genomics 3 (10), e000131, 2017
5812017
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ...
Nature genetics 47 (6), 632-639, 2015
4732015
Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen
TAN Pham, S Clare, D Goulding, JM Arasteh, MD Stares, HP Browne, ...
Cell host & microbe 16 (4), 504-516, 2014
3012014
GeneDB—an annotation database for pathogens
FJ Logan-Klumpler, N De Silva, U Boehme, MB Rogers, G Velarde, ...
Nucleic acids research 40 (D1), D98-D108, 2012
2792012
Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans
AP Jackson, JA Gamble, T Yeomans, GP Moran, D Saunders, D Harris, ...
Genome research 19 (12), 2231-2244, 2009
2692009
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
AJ Page, N De Silva, M Hunt, MA Quail, J Parkhill, SR Harris, TD Otto, ...
Microbial genomics 2 (8), e000083, 2016
2362016
Optimal enzymes for amplifying sequencing libraries
MA Quail, TD Otto, Y Gu, SR Harris, TF Skelly, JA McQuillan, ...
Nature methods 9 (1), 10-11, 2012
2312012
IVA: accurate de novo assembly of RNA virus genomes
M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ...
Bioinformatics 31 (14), 2374-2376, 2015
2032015
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries
L Barquist, M Mayho, C Cummins, AK Cain, CJ Boinett, AJ Page, ...
Bioinformatics 32 (7), 1109-1111, 2016
1922016
The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis
AP Jackson, M Sanders, A Berry, J McQuillan, MA Aslett, MA Quail, ...
PLoS Neglected Tropical Diseases 4 (4), e658, 2010
1752010
Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species
AP Jackson, A Berry, M Aslett, HC Allison, P Burton, J Vavrova-Anderson, ...
Proceedings of the National Academy of Sciences 109 (9), 3416-3421, 2012
1702012
An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid
VK Wong, S Baker, TR Connor, D Pickard, AJ Page, J Dave, N Murphy, ...
Nature communications 7 (1), 12827, 2016
1462016
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments. Microb Genom 2: e000056
AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ...
1122016
The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa
SE Park, DT Pham, C Boinett, VK Wong, GD Pak, U Panzner, ...
Nature communications 9 (1), 5094, 2018
1112018
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