Nathan T. Weeks
Nathan T. Weeks
Harvard University, Iowa State University, USDA Agricultural Research Service
Verified email at iastate.edu - Homepage
Title
Cited by
Cited by
Year
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
40682013
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
DL Hyten, SB Cannon, Q Song, N Weeks, EW Fickus, RC Shoemaker, ...
BMC genomics 11 (1), 38, 2010
2592010
Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean
YT Bolon, B Joseph, SB Cannon, MA Graham, BW Diers, AD Farmer, ...
BMC Plant Biology 10 (1), 41, 2010
982010
A comprehensive transcriptome assembly of pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms
H Kudapa, AK Bharti, SB Cannon, AD Farmer, B Mulaosmanovic, ...
Molecular plant 5 (5), 1020-1028, 2012
902012
Legume information system (LegumeInfo. org): a key component of a set of federated data resources for the legume family
S Dash, JD Campbell, EKS Cannon, AM Cleary, W Huang, SR Kalberer, ...
Nucleic acids research 44 (D1), D1181-D1188, 2016
712016
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko, D Gao, G Seijo, ...
Nature genetics 51 (5), 877-884, 2019
602019
Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress
V Belamkar, NT Weeks, AK Bharti, AD Farmer, MA Graham, SB Cannon
BMC genomics 15 (1), 950, 2014
562014
Gene expression patterns are correlated with genomic and genic structure in soybean
JL Woody, AJ Severin, YT Bolon, B Joseph, BW Diers, AD Farmer, ...
Genome 54 (1), 10-18, 2011
262011
Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors
L Koesterke, JE Koltes, NT Weeks, K Milfeld, MW Vaughn, JM Reecy, ...
Concurrency and Computation: Practice and Experience 26 (13), 2178-2190, 2014
182014
Genome‐wide methylation profile following prenatal and postnatal dietary omega‐3 fatty acid supplementation in pigs
RL Boddicker, JE Koltes, ER Fritz‐Waters, L Koesterke, N Weeks, T Yin, ...
Animal Genetics 47 (6), 658-671, 2016
162016
High-performance epistasis detection in quantitative trait GWAS
NT Weeks, GR Luecke, BM Groth, M Kraeva, L Ma, LM Kramer, JE Koltes, ...
The International Journal of High Performance Computing Applications 32 (3 …, 2018
152018
Optimizing the PCIT algorithm on stampede's Xeon and Xeon Phi processors for faster discovery of biological networks
L Koesterke, K Milfeld, MW Vaughn, D Stanzione, JE Koltes, NT Weeks, ...
Proceedings of the conference on extreme science and engineering discovery …, 2013
142013
Fast epistasis detection in large-scale GWAS for intel xeon Phi clusters
GR Luecke, NT Weeks, BM Groth, M Kraeva, L Ma, LM Kramer, JE Koltes, ...
2015 IEEE Trustcom/BigDataSE/ISPA 3, 228-235, 2015
112015
Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume
V Belamkar, AD Farmer, NT Weeks, SR Kalberer, WJ Blackmon, ...
Scientific reports 6, 34908, 2016
92016
GeoWall: Investigations into low-cost stereo display systems
D Steinwand, B Davis, N Weeks
USGS Open File Report, 03-198, 2002
92002
Optimization of SAMtools sorting using OpenMP tasks
NT Weeks, GR Luecke
Cluster Computing 20 (3), 1869-1880, 2017
52017
Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle
LM Kramer, MAA Ghaffar, JE Koltes, ER Fritz-Waters, MS Mayes, ...
BMC genomics 17 (1), 891, 2016
32016
Challenges in Developing MPI Fault-Tolerant Fortran Applications
N Weeks, G Luecke, P Maris, J Vary
2018 IEEE International Conference on Cluster Computing (CLUSTER), 524-531, 2018
22018
Ten quick tips for sharing open genomic data
AV Brown, JD Campbell, T Assefa, D Grant, RT Nelson, NT Weeks, ...
PLOS Computational Biology 14 (12), e1006472, 2018
12018
Comparing Allinea's and Intel's performance tools for HPC
GR Luecke, BM Groth, NT Weeks, M Kraeva
Proceedings of the 25th High Performance Computing Symposium, 3, 2017
12017
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