xin chen
xin chen
Tianjin University, TCAM
Verified email at uga.edu
TitleCited byYear
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
Y Yin, X Mao, J Yang, X Chen, F Mao, Y Xu
Nucleic acids research 40 (W1), W445-W451, 2012
7902012
DOOR 2.0: presenting operons and their functions through dynamic and integrated views
X Mao, Q Ma, C Zhou, X Chen, H Zhang, J Yang, F Mao, W Lai, Y Xu
Nucleic acids research 42 (D1), D654-D659, 2013
1162013
DMINDA: an integrated web server for DNA motif identification and analyses
Q Ma, H Zhang, X Mao, C Zhou, B Liu, X Chen, Y Xu
Nucleic acids research 42 (W1), W12-W19, 2014
302014
DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses
J Yang, X Chen, A McDermaid, Q Ma
Bioinformatics 33 (16), 2586-2588, 2017
252017
Genome-scale identification of cell-wall-related genes in switchgrass through comparative genomics and computational analyses of transcriptomic data
X Chen, Q Ma, X Rao, Y Tang, Y Wang, G Li, C Zhang, X Mao, RA Dixon, ...
BioEnergy Research 9 (1), 172-180, 2016
102016
Revisiting operons: an analysis of the landscape of transcriptional units in E. coli
X Mao, Q Ma, B Liu, X Chen, H Zhang, Y Xu
BMC bioinformatics 16 (1), 356, 2015
92015
Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum)
X Rao, X Chen, H Shen, Q Ma, G Li, Y Tang, M Pena, W York, TP Frazier, ...
Plant biotechnology journal 17 (3), 580-593, 2019
82019
SeqTU: a web server for identification of bacterial transcription units
X Chen, WC Chou, Q Ma, Y Xu
Scientific reports 7, 43925, 2017
72017
Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells
X Rao, H Shen, S Pattathil, MG Hahn, I Gelineo-Albersheim, D Mohnen, ...
Biotechnology for biofuels 10 (1), 266, 2017
62017
DOOR: a prokaryotic operon database for genome analyses and functional inference
H Cao, Q Ma, X Chen, Y Xu
Briefings in bioinformatics, 2017
62017
CINPER: an interactive web system for pathway prediction for prokaryotes
X Mao, X Chen, Y Zhang, S Pangle, Y Xu
PloS one 7 (12), e51252, 2012
62012
Identification and typing of human enterovirus: a genomic barcode approach
C Wei, G Wang, X Chen, H Huang, B Liu, Y Xu, F Li
PloS one 6 (10), e26296, 2011
52011
Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective
Q Ma, X Chen, C Liu, XZ Mao, HY Zhang, F Ji, CG Wu, Y Xu
Science China Life Sciences 57 (11), 1121-1130, 2014
32014
A new machine learning-based framework for mapping uncertainty analysis in RNA-Seq read alignment and gene expression estimation
A McDermaid, X Chen, Y Zhang, C Wang, S Gu, J Xie, Q Ma
Frontiers in genetics 9, 313, 2018
22018
Specific biomarkers: detection of cancer biomarkers through high-throughput transcriptomics data
W Du, Z Cao, Y Wang, F Zhou, W Pang, X Chen, Y Tian, Y Liang
Cognitive Computation 7 (6), 652-666, 2015
22015
A probabilistic model-based bi-clustering method for single-cell transcriptomic data analysis
S Cao, T Sheng, X Chen, Q Ma, C Zhang
bioRxiv, 181362, 2017
12017
RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis
X Chen, A Ma, A McDermaid, H Zhang, C Liu, H Cao, Q Ma
Genes 9 (6), 278, 2018
2018
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