| Unidirectional single-file transport of full-length proteins through a nanopore L Yu, X Kang, F Li, B Mehrafrooz, A Makhamreh, A Fallahi, JC Foster, ... Nature Biotechnology 41 (8), 1130-1139, 2023 | 46 | 2023 |
| Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct long-read sequencing S Tavakoli, M Nabizadeh, A Makhamreh, H Gamper, CA McCormick, ... Nature Communications 14 (1), 334, 2023 | 43* | 2023 |
| Transcriptional repression by FEZF2 restricts alternative identities of cortical projection neurons J Tsyporin, D Tastad, X Ma, A Nehme, T Finn, L Huebner, G Liu, ... Cell reports 35 (12), 2021 | 31 | 2021 |
| Messenger-RNA modification standards and machine learning models facilitate absolute site-specific pseudouridine quantification A Makhamreh, S Tavakoli, H Gamper, M Nabizadehmashhadtoroghi, ... bioRxiv, 2022.05. 06.490948, 2022 | 9 | 2022 |
| Discrimination of RNA fiber structures using solid-state nanopores P Tripathi, M Chandler, CM Maffeo, A Fallahi, A Makhamreh, J Halman, ... Nanoscale 14 (18), 6866-6875, 2022 | 9 | 2022 |
| Automated dispensing and fractionation of nanoparticles and viral vectors through a quantitative nanopore mesh device A Fallahi, Y Liu, AK Makhamreh, W Liang, J Potts, SH Rouhanifard, ... Biophysical Journal 123 (3), 151a, 2024 | 1 | 2024 |
| Author Correction: Unidirectional single-file transport of full-length proteins through a nanopore L Yu, X Kang, F Li, B Mehrafrooz, A Makhamreh, A Fallahi, JC Foster, ... Nature biotechnology 41 (10), 1483, 2023 | 1 | 2023 |
| Enzymatic synthesis of RNA standards for mapping and quantifying RNA modifications in sequencing analysis. H Gamper, C McCormick, A Makhamreh, M Wanunu, SH Rouhanifard, ... Methods in Enzymology 692, 127-153, 2023 | 1 | 2023 |
| Messenger-RNA modification standards and machine learning models facilitate absolute site-specific quantification of uridine modifications AK Makhamreh, S Tavakoli, H Gamper, M Nabizadehmashhadtoroghi, ... Biophysical Journal 122 (3), 290a, 2023 | 1 | 2023 |
| Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess neuronal epitranscriptome plasticity O Fanari, S Tavakoli, S Akeson, A Makhamreh, K Nian, CA McCormick, ... bioRxiv, 2024.03. 26.586895, 2024 | | 2024 |
| Fluorescent nucleotides and circular RNA for the identification and quantification of RNA modifications MM Scanlon, KM Bardon, AK Makhamreh, Y Yee, M Wanunu Biophysical Journal 123 (3), 162a, 2024 | | 2024 |
| Terminal tagging of full-length proteins for enhanced capturing by biological nanopores Z Zhang, D Bloch, L Yu, Y Chen, X Kang, AK Makhamreh, JC Foster, ... Biophysical Journal 123 (3), 149a, 2024 | | 2024 |
| Multi-channel nanopore sensing platform for single-molecule protein fingerprinting AK Makhamreh, A Fallahi, Z Zhang, M Wanunu Biophysical Journal 123 (3), 146a, 2024 | | 2024 |
| Domain-swapped G20c portal protein facilitates insertion into lipid membranes for nanopore sensing Y Shi, AK Makhamreh, K Veillette, M Chechik, F Antson, E Libby, ... Biophysical Journal 123 (3), 147a, 2024 | | 2024 |
| Single molecule sequencing and imaging of pseudouridine modifications in the human transcriptome SH Rouhanifard, S Tavakoli, AK Makhamreh, C McCormick, X Kang, ... Biophysical Journal 122 (3), 273a, 2023 | | 2023 |
| Improving insertions of mutated G20C portal protein into lipid bilayers for nanopore sensing Y Shi, AK Makhamreh, M Chechik, A Antson, M Wanunu Biophysical Journal 122 (3), 437a-438a, 2023 | | 2023 |
| Fingerprinting full-length proteins through single-file translocations L Yu, X Kang, F Li, B Mehrafrooz, AK Makhamreh, A Fallahi, JC Foster, ... Biophysical journal 122 (3), 289a, 2023 | | 2023 |
| Nanopore-based quantification of viral vectors and nanoparticles as an analytical tool for gene therapy products A Fallahi, Y Liu, AK Makhamreh, W Liang, J Potts, SH Rouhanifard, ... Biophysical Journal 122 (3), 455a, 2023 | | 2023 |
| Semi-quantitative Detection of Pseudouridine Modifications and Type I/II I/Ii Hypermodifications in Human mRNAs Using Direct Long-Read Sequencing S Tavakoli, M Nabizadeh, A Makhamreh, H Gamper, CA McCormick, ... | | 2023 |
| Controlled laser-induced fabrication of multichannel solid-state nanopore sensors for studying single-molecule protein dynamics AK Makhamreh, A Fallahi, H Yamazaki, M Wanunu Biophysical Journal 121 (3), 422a-423a, 2022 | | 2022 |
