Simon Cockell
Simon Cockell
Senior Lecturer, School of Biomedical, Nutritional and Sports Sciences, Newcastle University
Verified email at newcastle.ac.uk - Homepage
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Year
BioStar: an online question & answer resource for the bioinformatics community
LD Parnell, P Lindenbaum, K Shameer, GM Dall'Olio, DC Swan, ...
PLoS computational biology 7 (10), e1002216, 2011
942011
Regulation of p53 and Rb links the alternative NF-κB pathway to EZH2 expression and cell senescence
A Iannetti, AC Ledoux, SJ Tudhope, H Sellier, B Zhao, S Mowla, A Moore, ...
PLoS genetics 10 (9), e1004642, 2014
852014
Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically characterised cohort☆
QM Anstee, R Darlay, S Cockell, M Meroni, O Govaere, D Tiniakos, ...
Journal of hepatology 73 (3), 505-515, 2020
722020
Zinc sensing by metal-responsive transcription factor 1 (MTF1) controls metallothionein and ZnT1 expression to buffer the sensitivity of the transcriptome response to zinc
JEJ Hardyman, J Tyson, KA Jackson, C Aldridge, SJ Cockell, ...
Metallomics 8 (3), 337-343, 2016
582016
MRE11 facilitates the removal of human topoisomerase II complexes from genomic DNA
KC Lee, K Padget, H Curtis, IG Cowell, D Moiani, Z Sondka, NJ Morris, ...
Biology open 1 (9), 863-873, 2012
552012
Deconstructing retinal organoids: single cell RNA‐Seq reveals the cellular components of human pluripotent stem cell‐derived retina
J Collin, R Queen, D Zerti, B Dorgau, R Hussain, J Coxhead, S Cockell, ...
Stem Cells 37 (5), 593-598, 2019
542019
Analysis of primary visual cortex in dementia with Lewy bodies indicates GABAergic involvement associated with recurrent complex visual hallucinations
AA Khundakar, PS Hanson, D Erskine, NZ Lax, J Roscamp, E Karyka, ...
Acta neuropathologica communications 4 (1), 1-18, 2016
502016
Contribution of natural antisense transcription to an endogenous siRNA signature in human cells
A Werner, S Cockell, J Falconer, M Carlile, S Alnumeir, J Robinson
BMC genomics 15 (1), 1-12, 2014
482014
Structure− function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant
LKJ Stadler, T Hoffmann, DC Tomlinson, Q Song, T Lee, M Busby, ...
Protein Engineering, Design & Selection 24 (9), 751-763, 2011
482011
An integrated dataset for in silico drug discovery
SJ Cockell, J Weile, P Lord, C Wipat, D Andriychenko, M Pocock, ...
Journal of integrative bioinformatics 7 (3), 15-27, 2010
362010
The zinc finger protein ZNF658 regulates the transcription of genes involved in zinc homeostasis and affects ribosome biogenesis through the zinc transcriptional regulatory element
OA Ogo, J Tyson, SJ Cockell, A Howard, RA Valentine, D Ford
Molecular and cellular biology 35 (6), 977-987, 2015
342015
Misincorporation by RNA polymerase is a major source of transcription pausing in vivo
K James, P Gamba, SJ Cockell, N Zenkin
Nucleic acids research 45 (3), 1105-1113, 2017
332017
Transcriptomics and proteomics show that selenium affects inflammation, cytoskeleton, and cancer pathways in human rectal biopsies
C Méplan, IT Johnson, ACJ Polley, S Cockell, DM Bradburn, ...
The FASEB Journal 30 (8), 2812-2825, 2016
332016
The NF-κB subunit c-Rel regulates Bach2 tumour suppressor expression in B-cell lymphoma
JE Hunter, JA Butterworth, B Zhao, H Sellier, KJ Campbell, HD Thomas, ...
Oncogene 35 (26), 3476-3484, 2016
312016
An integrated data driven approach to drug repositioning using gene-disease associations
J Mullen, SJ Cockell, P Woollard, A Wipat
PloS one 11 (5), e0155811, 2016
302016
Genome-wide ChIP-seq analysis of human TOP2B occupancy in MCF7 breast cancer epithelial cells
CM Manville, K Smith, Z Sondka, H Rance, S Cockell, IG Cowell, KC Lee, ...
Biology open 4 (11), 1436-1447, 2015
262015
Structure-based evaluation of in silico predictions of protein–protein interactions using Comparative Docking
SJ Cockell, B Oliva, RM Jackson
Bioinformatics 23 (5), 573-581, 2007
262007
NASH limits anti-tumour surveillance in immunotherapy-treated HCC
D Pfister, NG Núñez, R Pinyol, O Govaere, M Pinter, M Szydlowska, ...
Nature 592 (7854), 450-456, 2021
252021
Epigenetic landscape correlates with genetic subtype but does not predict outcome in childhood acute lymphoblastic leukemia
AS Gabriel, FM Lafta, EC Schwalbe, S Nakjang, SJ Cockell, A Iliasova, ...
Epigenetics 10 (8), 717-726, 2015
242015
Abundant and equipotent founder cells establish and maintain acute lymphoblastic leukaemia
A Elder, S Bomken, I Wilson, HJ Blair, S Cockell, F Ponthan, K Dormon, ...
Leukemia 31 (12), 2577-2586, 2017
232017
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