|The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.|
L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ...
Nat Biotechnol 28 (8), 827, 2010
|A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium|
Nature Biotechnology 32 (9), 903-914, 2014
|Pathology imaging informatics for quantitative analysis of whole-slide images|
S Kothari, JH Phan, TH Stokes, MD Wang
Journal of the American Medical Informatics Association 20 (6), 1099-1108, 2013
|Comparison of RNA-seq and microarray-based models for clinical endpoint prediction|
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16 (1), 133, 2015
|Detecting and correcting systematic variation in large-scale RNA sequencing data|
S Li, PP Łabaj, P Zumbo, P Sykacek, W Shi, L Shi, J Phan, PY Wu, ...
Nature biotechnology 32 (9), 888-895, 2014
|k-Nearest neighbor models for microarray gene expression analysis and clinical outcome prediction|
RM Parry, W Jones, TH Stokes, JH Phan, RA Moffitt, H Fang, L Shi, ...
The pharmacogenomics journal 10 (4), 292-309, 2010
|Convergence of biomarkers, bioinformatics and nanotechnology for individualized cancer treatment|
JH Phan, RA Moffitt, TH Stokes, J Liu, AN Young, S Nie, MD Wang
Trends Biotechnol 27 (6), 350-358, 2009
|Automatic batch-invariant color segmentation of histological cancer images|
S Kothari, JH Phan, RA Moffitt, TH Stokes, SE Hassberger, Q Chaudry, ...
2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2011
|Histological image classification using biologically interpretable shape-based features|
S Kothari, JH Phan, AN Young, MD Wang
BMC Medical Imaging 13 (1), 9, 2013
|Multi-Scale Integration of-omic, Imaging, and Clinical Data in Biomedical Informatics|
J Phan, C Quo, C Cheng, M Wang
|Advances in molecular classification of renal neoplasms|
Q Yin-Goen, J Dale, WL Yang, JH Phan, RA Moffitt, JA Petros, MW Datta, ...
Histol Histopathol 21 (3), 325-39, 2006
|Computational nanomedicine: modeling of nanoparticle-mediated hyperthermal cancer therapy|
CD Kaddi, JH Phan, MD Wang
Nanomedicine 8 (8), 1323-1333, 2013
|Biological interpretation of morphological patterns in histopathological whole-slide images|
S Kothari, JH Phan, AO Osunkoya, MD Wang
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
|c hip a rtifact CORRECT ion (caCORRECT): A Bioinformatics System for Quality Assurance of Genomics and Proteomics Array Data|
TH Stokes, RA Moffitt, JH Phan, MD Wang
Annals of biomedical engineering 35 (6), 1068-1080, 2007
|Assessing the impact of human genome annotation choice on RNA-seq expression estimates|
PY Wu, JH Phan, MD Wang
BMC bioinformatics 14 (11), S8, 2013
|Benchmarking RNA-Seq quantification tools|
R Chandramohan, PY Wu, JH Phan, MD Wang
2013 35th Annual International Conference of the IEEE Engineering in …, 2013
|Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics|
JH Phan, CF Quo, MD Wang
Progress in brain research 158, 83-108, 2006
|Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data|
Y Sha, JH Phan, MD Wang
2015 37th Annual International Conference of the IEEE Engineering in …, 2015
|Eliminating tissue-fold artifacts in histopathological whole-slide images for improved image-based prediction of cancer grade|
S Kothari, JH Phan, MD Wang
Journal of pathology informatics 4 (1), 22, 2013
|Diagnostic biomarkers for renal cell carcinoma: selection using novel bioinformatics systems for microarray data analysis|
AO Osunkoya, Q Yin-Goen, JH Phan, RA Moffitt, TH Stokes, MD Wang, ...
Human pathology 40 (12), 1671-1678, 2009