| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1266 | 2018 |
| The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021 | 195 | 2021 |
| Plant B vitamin pathways and their compartmentation: a guide for the perplexed S Gerdes, C Lerma-Ortiz, O Frelin, SMD Seaver, CS Henry, ... Journal of experimental botany 63 (15), 5379-5395, 2012 | 104 | 2012 |
| Frontiers in metabolic reconstruction and modeling of plant genomes SMD Seaver, CS Henry, AD Hanson Journal of experimental botany 63 (6), 2247-2258, 2012 | 88 | 2012 |
| High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource SMD Seaver, S Gerdes, O Frelin, C Lerma-Ortiz, LMT Bradbury, R Zallot, ... Proceedings of the National Academy of Sciences 111 (26), 9645-9650, 2014 | 84 | 2014 |
| Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm SMD Seaver, LMT Bradbury, O Frelin, R Zarecki, E Ruppin, AD Hanson, ... Frontiers in plant science 6, 142, 2015 | 61 | 2015 |
| Monster: inferring non-covalent interactions in macromolecular structures from atomic coordinate data WJ Salerno, SM Seaver, BR Armstrong, I Radhakrishnan Nucleic acids research 32 (suppl_2), W566-W568, 2004 | 47 | 2004 |
| PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency SMD Seaver, C Lerma‐Ortiz, N Conrad, A Mikaili, A Sreedasyam, ... The Plant Journal 95 (6), 1102-1113, 2018 | 34 | 2018 |
| Metabolomic profiling of the nectars of Aquilegia pubescens and A. canadensis C Noutsos, AM Perera, BJ Nikolau, SMD Seaver, DH Ware PLoS One 10 (5), e0124501, 2015 | 26 | 2015 |
| A pathway for every product? Tools to discover and design plant metabolism JG Jeffryes, SMD Seaver, JP Faria, CS Henry Plant Science 273, 61-70, 2018 | 25 | 2018 |
| Integration of plant metabolomics data with metabolic networks: progresses and challenges N Töpfer, SMD Seaver, A Aharoni Plant Metabolomics: Methods and Protocols, 297-310, 2018 | 16 | 2018 |
| Constructing and analyzing metabolic flux models of microbial communities JP Faria, T Khazaei, JN Edirisinghe, P Weisenhorn, SMD Seaver, ... Hydrocarbon and Lipid Microbiology Protocols: Genetic, Genomic and System …, 2017 | 15 | 2017 |
| Micro-bias and macro-performance SMD Seaver, AA Moreira, M Sales-Pardo, RD Malmgren, D Diermeier, ... The European Physical Journal B 67, 369-375, 2009 | 10 | 2009 |
| A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum. S Kumari, V Kumar, K Beilsmith, SMD Seaver, S Canon, P Dehal, T Gu, ... Current plant biology 28, 100229, 2021 | 6 | 2021 |
| ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction JP Faria, F Liu, JN Edirisinghe, N Gupta, SMD Seaver, AP Freiburger, ... bioRxiv, 2023.10. 04.556561, 2023 | 5 | 2023 |
| Genome-scale modeling of the primary-specialized metabolism interface K Beilsmith, CS Henry, SMD Seaver Current Opinion in Plant Biology 68, 102244, 2022 | 3 | 2022 |
| Systems-level analysis of the plasticity of the maize metabolic network reveals novel hypotheses in the nitrogen-use efficiency of maize roots SMD Seaver Journal of Experimental Botany 73 (1), 5-7, 2022 | 2 | 2022 |
| Phenomenological model for predicting the catabolic potential of an arbitrary nutrient SMD Seaver, M Sales-Pardo, R Guimerà, LAN Amaral PLoS computational biology 8 (11), e1002762, 2012 | 2 | 2012 |
| Social cognition in complex team networks SMD Seaver, RD Malmgren, AA Moreira, M Sales-Pardo, D Diermeier, ... Proceedings of the 2005 workshop on social agents, Argonne National …, 2006 | 2 | 2006 |
| Improving Automated Model Reconstruction across Phylogenetically Diverse Genome-Scale Metabolic Models. JP Faria, JN Edirisinghe, S Liu, SMD Seaver, P Weisenhorn, JG Jeffryes, ... 2017 AIChE Annual Meeting, 2017 | | 2017 |
Christopher HenryComputational Biologist, Argonne National LaboratoryVerified email at mcs.anl.gov
