Stijn van Dongen
Stijn van Dongen
Senior Data Wrangler, ExpressionEdits, Cambridge UK
Verified email at - Homepage
Cited by
Cited by
miRBase: microRNA sequences, targets and gene nomenclature
S Griffiths-Jones, RJ Grocock, S Van Dongen, A Bateman, AJ Enright
Nucleic acids research 34 (suppl_1), D140-D144, 2006
miRBase: tools for microRNA genomics
S Griffiths-Jones, HK Saini, S Van Dongen, AJ Enright
Nucleic acids research 36 (suppl_1), D154-D158, 2007
An efficient algorithm for large-scale detection of protein families
AJ Enright, S Van Dongen, CA Ouzounis
Nucleic acids research 30 (7), 1575-1584, 2002
Graph clustering by flow simulation
S Van Dongen
PhD thesis, University of Utrecht, 2000
Requirement of bic/microRNA-155 for normal immune function
A Rodriguez, E Vigorito, S Clare, MV Warren, P Couttet, DR Soond, ...
Science 316 (5824), 608-611, 2007
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
AJ Giraldez, Y Mishima, J Rihel, RJ Grocock, S Van Dongen, K Inoue, ...
Science 312 (5770), 75, 2006
Graph clustering via a discrete uncoupling process
S Van Dongen
SIAM Journal on Matrix Analysis and Applications 30 (1), 121-141, 2008
A new cluster algorithm for graphs
S Van Dongen, ...
Centrum voor Wiskunde en Informatica, 1998
Single-cell multi-omics analysis of the immune response in COVID-19
E Stephenson, G Reynolds, RA Botting, FJ Calero-Nieto, MD Morgan, ...
Nature medicine 27 (5), 904-916, 2021
Network visualization and analysis of gene expression data using BioLayout Express3D
A Theocharidis, S Van Dongen, AJ Enright, TC Freeman
Nature protocols 4 (10), 1535-1550, 2009
Kraken: a set of tools for quality control and analysis of high-throughput sequence data
MPA Davis, S van Dongen, C Abreu-Goodger, N Bartonicek, AJ Enright
Methods 63 (1), 41-49, 2013
Using MCL to extract clusters from networks
S Van Dongen, C Abreu-Goodger
Bacterial molecular networks: Methods and protocols, 281-295, 2012
RNA editing of human microRNAs
MJ Blow, RJ Grocock, S van Dongen, AJ Enright, E Dicks, PA Futreal, ...
Genome biology 7, 1-8, 2006
An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice
MA Lewis, E Quint, AM Glazier, H Fuchs, MH De Angelis, C Langford, ...
Nature genetics 41 (5), 614-618, 2009
Cells of the human intestinal tract mapped across space and time
R Elmentaite, N Kumasaka, K Roberts, A Fleming, E Dann, HW King, ...
Nature 597 (7875), 250-255, 2021
Detecting microRNA binding and siRNA off-target effects from expression data
S Van Dongen, C Abreu-Goodger, AJ Enright
Nature methods 5 (12), 1023-1025, 2008
Performance criteria for graph clustering and Markov cluster experiments
S Van Dongen
Report-Information systems, 1-36, 2000
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
L Garcia-Alonso, LF Handfield, K Roberts, K Nikolakopoulou, ...
Nature genetics 53 (12), 1698-1711, 2021
Construction, visualisation, and clustering of transcription networks from microarray expression data
TC Freeman, L Goldovsky, M Brosch, S Van Dongen, P Mazière, ...
PLoS computational biology 3 (10), e206, 2007
Malignant germ cell tumors display common microRNA profiles resulting in global changes in expression of messenger RNA targets
RD Palmer, MJ Murray, HK Saini, S van Dongen, C Abreu-Goodger, ...
Cancer research 70 (7), 2911-2923, 2010
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