Leo Caves
Leo Caves
Independent Researcher; Associate YCCSA
Verified email at york.ac.uk - Homepage
TitleCited byYear
CHARMM: the biomolecular simulation program
BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ...
Journal of computational chemistry 30 (10), 1545-1614, 2009
51812009
Bio3d: an R package for the comparative analysis of protein structures
BJ Grant, APC Rodrigues, KM ElSawy, JA McCammon, LSD Caves
Bioinformatics 22 (21), 2695-2696, 2006
6692006
Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin
LSD Caves, JD Evanseck, M Karplus
Protein Science 7 (3), 649-666, 1998
4501998
Mutation in myosin heavy chain 6 causes atrial septal defect
YH Ching, TK Ghosh, SJ Cross, EA Packham, L Honeyman, S Loughna, ...
Nature genetics 37 (4), 423, 2005
2672005
Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol
AC English, SH Done, LSD Caves, CR Groom, RE Hubbard
Proteins: Structure, Function, and Bioinformatics 37 (4), 628-640, 1999
1251999
Understanding the mechanism of ice binding by type III antifreeze proteins
AA Antson, DJ Smith, DI Roper, S Lewis, LSD Caves, CS Verma, ...
Journal of molecular biology 305 (4), 875-889, 2001
1182001
MBO (N) D: A multibody method for long‐time molecular dynamics simulations
HM Chun, CE Padilla, DN Chin, M Watanabe, VI Karlov, HE Alper, ...
Journal of Computational Chemistry 21 (3), 159-184, 2000
1082000
Demonstration that 1-trans-epoxysuccinyl-l-leucylamido-(4-guanidino) butane (E-64) is one of the most effective low Mr inhibitors of trypsin-catalysed hydrolysis …
SK SREEDHARAN, C VERMA, LSD CAVES, SM BROCKLEHURST, ...
Biochemical Journal 316 (3), 777-786, 1996
651996
Investigating the high affinity and low sequence specificity of calmodulin binding to its targets
M Afshar, LSD Caves, L Guimard, RE Hubbard, B Calas, G Grassy, ...
Journal of molecular biology 244 (5), 554-571, 1994
581994
Conformational change in the activation of lipase: An analysis in terms of low‐frequency normal modes
S Jääskeläinen, CS Verma, RE Hubbard, P Lestko, LSD Caves
Protein science 7 (6), 1359-1367, 1998
561998
Multivariate analysis of conserved sequence–structure relationships in kinesins: coupling of the active site and a tubulin-binding sub-domain
BJ Grant, JA McCammon, LSD Caves, RA Cross
Journal of molecular biology 368 (5), 1231-1248, 2007
462007
On the interaction mechanisms of a p53 peptide and nutlin with the MDM2 and MDMX proteins: a Brownian dynamics study
K ElSawy, CS Verma, TL Joseph, DP Lane, R Twarock, L Caves
Cell Cycle 12 (3), 394-404, 2013
362013
Inherent flexibility of calmodulin domains: A normal-mode analysis study
NP Barton, CS Verma, LSD Caves
The Journal of Physical Chemistry B 106 (42), 11036-11040, 2002
362002
Domain motions in dihydrofolate reductase: a molecular dynamics study
CS Verma, LSD Caves, RE Hubbard, GCK Roberts
Journal of molecular biology 266 (4), 776-796, 1997
321997
Controlling complex dynamics with artificial biochemical networks
MA Lones, AM Tyrrell, S Stepney, LS Caves
European Conference on Genetic Programming, 159-170, 2010
282010
The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA
KM Elsawy, MK Hodgson, LSD Caves
Nucleic acids research 33 (18), 5749-5762, 2005
282005
The impact of viral RNA on the association rates of capsid protein assembly: bacteriophage MS2 as a case study
KM ElSawy, LSD Caves, R Twarock
Journal of molecular biology 400 (4), 935-947, 2010
262010
Calculation of the reaction pathway for the aromatic ring flip in methotrexate complexed to dihydrofolate reductase
CS Verma, S Fischer, LSD Caves, GCK Roberts, RE Hubbard
The Journal of Physical Chemistry 100 (7), 2510-2518, 1996
251996
Peptide inhibitors of viral assembly: a novel route to broad-spectrum antivirals
KM ElSawy, R Twarock, CS Verma, LSD Caves
Journal of chemical information and modeling 52 (3), 770-776, 2012
212012
RBN-World
A Faulconbridge, S Stepney, JF Miller, LSD Caves
European Conference on Artificial Life, 377-384, 2009
212009
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