Carole Knibbe
Carole Knibbe
Associate Professor in Computational Biology, INSA Lyon, France
Verified email at insa-lyon.fr - Homepage
Title
Cited by
Cited by
Year
New insights into bacterial adaptation through in vivo and in silico experimental evolution
T Hindré, C Knibbe, G Beslon, D Schneider
Nature Reviews Microbiology 10 (5), 352-365, 2012
1512012
The surprising creativity of digital evolution: A collection of anecdotes from the evolutionary computation and artificial life research communities
J Lehman, J Clune, D Misevic, C Adami, L Altenberg, J Beaulieu, ...
Artificial Life 26 (2), 274-306, 2020
1242020
Reductive genome evolution at both ends of the bacterial population size spectrum
B Batut, C Knibbe, G Marais, V Daubin
Nature Reviews Microbiology 12 (12), 841-850, 2014
992014
A long-term evolutionary pressure on the amount of noncoding DNA
C Knibbe, A Coulon, O Mazet, JM Fayard, G Beslon
Molecular biology and evolution 24 (10), 2344-2353, 2007
832007
In silico experimental evolution: a tool to test evolutionary scenarios
B Batut, DP Parsons, S Fischer, G Beslon, C Knibbe
BMC bioinformatics 14 (S15), S11, 2013
542013
Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences
C Knibbe, O Mazet, F Chaudier, JM Fayard, G Beslon
Journal of Theoretical Biology 244 (4), 621-630, 2007
412007
Scaling laws in bacterial genomes: A side-effect of selection of mutational robustness?
G Beslon, DP Parsons, Y Sanchez-Dehesa, JM Pena, C Knibbe
Biosystems 102 (1), 32-40, 2010
332010
The topology of the protein network influences the dynamics of gene order: From systems biology to a systemic understanding of evolution
C Knibbe, JM Fayard, G Beslon
Artificial life 14 (1), 149-156, 2008
272008
Breaking good: accounting for fragility of genomic regions in rearrangement distance estimation
P Biller, L Guéguen, C Knibbe, E Tannier
Genome biology and evolution 8 (5), 1427-1439, 2016
222016
Comparative genomics on artificial life
P Biller, C Knibbe, G Beslon, E Tannier
Conference on Computability in Europe, 35-44, 2016
212016
Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification
C Rocabert, C Knibbe, J Consuegra, D Schneider, G Beslon
PLoS computational biology 13 (3), e1005459, 2017
172017
Structuration des génomes par sélection indirecte de la variabilité mutationnelle: une approche de modélisation et de simulation
C Knibbe
172006
A model for genome size evolution
S Fischer, S Bernard, G Beslon, C Knibbe
Bulletin of mathematical biology 76 (9), 2249-2291, 2014
162014
Simultaneous optimization of weights and structure of an RBF neural network
V Lefort, C Knibbe, G Beslon, J Favrel
International Conference on Artificial Evolution (Evolution Artificielle), 49-60, 2005
142005
Importance of the Rearrangement Rates on the Organization of Genome Transcription.
DP Parsons, C Knibbe, G Beslon
ALife, 479-486, 2010
132010
Self-adaptation of genome size in artificial organisms
C Knibbe, G Beslon, V Lefort, F Chaudier, JM Fayard
European Conference on Artificial Life, 423-432, 2005
122005
Breaking good: accounting for the diversity of fragile regions for estimating rearrangement distances
P Biller, C Knibbe, L Guéguen, E Tannier
Genome Biol Evol 8, 1427-39, 2016
92016
A bio-inspired genetic algorithm with a self-organizing genome: The RBF-Gene Model
V Lefort, C Knibbe, G Beslon, J Favrel
Genetic and Evolutionary Computation Conference, 406-407, 2004
72004
Towards a Integrated Evolutionary Model to Study Evolution of Evolution
C Rocabert, C Knibbe, G Beslon
52015
Unexpected genome inflation and streamlining in variable environments
B Batut, G Beslon, C Knibbe
Proceedings of Jobim 2016, Lyon (France), 320-322, 2016
32016
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