Frederik Otzen Bagger
Frederik Otzen Bagger
University of Cambridge and EMBL-EBI
Verified email at ebi.ac.uk
TitleCited byYear
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455, 2014
13192014
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
1932016
Classification of low quality cells from single-cell RNA-seq data
T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ...
Genome biology 17 (1), 29, 2016
1682016
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis
FO Bagger, D Sasivarevic, SH Sohi, LG Laursen, S Pundhir, CK Sřnderby, ...
Nucleic acids research 44 (D1), D917-D924, 2015
1242015
Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis
KD Rasmussen, G Jia, JV Johansen, MT Pedersen, N Rapin, FO Bagger, ...
Genes & development 29 (9), 910-922, 2015
1172015
Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria
T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ...
Science immunology 2 (9), 2017
1082017
Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients
N Rapin, FO Bagger, J Jendholm, H Mora-Jensen, A Krogh, A Kohlmann, ...
Blood 123 (6), 894-904, 2014
662014
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, LA Thoren, ...
Nucleic acids research 41 (D1), D1034-D1039, 2012
632012
shRNA screening identifies JMJD1C as being required for leukemia maintenance
P Sroczynska, VA Cruickshank, JP Bukowski, S Miyagi, FO Bagger, ...
Blood 123 (12), 1870-1882, 2014
612014
C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic configurations in multipotent progenitors
MS Hasemann, FKB Lauridsen, J Waage, JS Jakobsen, AK Frank, ...
PLoS genetics 10 (1), e1004079, 2014
582014
Telomerase inhibition effectively targets mouse and human AML stem cells and delays relapse following chemotherapy
C Bruedigam, FO Bagger, FH Heidel, CP Kuhn, S Guignes, A Song, ...
Cell Stem Cell 15 (6), 775-790, 2014
522014
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18 (1), 18, 2017
472017
HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis
FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, J Jendholm, ...
Blood 119 (26), 6394-6395, 2012
302012
Modification of T cell responses by stem cell mobilization requires direct signaling of the T cell by G-CSF and IL-10
KPA MacDonald, L Le Texier, P Zhang, H Morris, RD Kuns, KE Lineburg, ...
The Journal of Immunology 192 (7), 3180-3189, 2014
272014
Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq
JS Jakobsen, FO Bagger, MS Hasemann, MB Schuster, AK Frank, ...
BMC genomics 16 (1), 46, 2015
252015
Autophagy is required for stem cell mobilization by G-CSF
L Leveque-El Mouttie, T Vu, KE Lineburg, RD Kuns, FO Bagger, BE Teal, ...
Blood 125 (19), 2933-2936, 2015
232015
ERG promotes the maintenance of hematopoietic stem cells by restricting their differentiation
KJ Knudsen, M Rehn, MS Hasemann, N Rapin, FO Bagger, E Ohlsson, ...
Genes & development 29 (18), 1915-1929, 2015
222015
Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly
HJ Genee, MT Bonde, FO Bagger, JB Jespersen, MOA Sommer, ...
ACS synthetic biology 4 (3), 342-349, 2014
142014
SinaPlot: an enhanced chart for simple and truthful representation of single observations over multiple classes
N Sidiropoulos, SH Sohi, TL Pedersen, BT Porse, O Winther, N Rapin, ...
Journal of Computational and Graphical Statistics 27 (3), 673-676, 2018
112018
Peak-valley-peak pattern of histone modifications delineates active regulatory elements and their directionality
S Pundhir, FO Bagger, FB Lauridsen, N Rapin, BT Porse
Nucleic acids research 44 (9), 4037-4051, 2016
112016
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