| An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014 | 2802 | 2014 |
| Classification of low quality cells from single-cell RNA-seq data T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ... Genome biology 17, 1-15, 2016 | 739 | 2016 |
| Genetic drivers of epigenetic and transcriptional variation in human immune cells L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ... Cell 167 (5), 1398-1414. e24, 2016 | 719 | 2016 |
| BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis FO Bagger, D Sasivarevic, SH Sohi, LG Laursen, S Pundhir, CK Sønderby, ... Nucleic acids research 44 (D1), D917-D924, 2016 | 339 | 2016 |
| Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ... Science immunology 2 (9), eaal2192, 2017 | 308 | 2017 |
| Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis KD Rasmussen, G Jia, JV Johansen, MT Pedersen, N Rapin, FO Bagger, ... Genes & development 29 (9), 910-922, 2015 | 297 | 2015 |
| BloodSpot: a database of healthy and malignant haematopoiesis updated with purified and single cell mRNA sequencing profiles FO Bagger, S Kinalis, N Rapin Nucleic acids research 47 (D1), D881-D885, 2019 | 232 | 2019 |
| Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients N Rapin, FO Bagger, J Jendholm, H Mora-Jensen, A Krogh, A Kohlmann, ... Blood, The Journal of the American Society of Hematology 123 (6), 894-904, 2014 | 176 | 2014 |
| Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ... Genome biology 18, 1-17, 2017 | 124 | 2017 |
| C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic configurations in multipotent progenitors MS Hasemann, FKB Lauridsen, J Waage, JS Jakobsen, AK Frank, ... PLoS genetics 10 (1), e1004079, 2014 | 121 | 2014 |
| shRNA screening identifies JMJD1C as being required for leukemia maintenance P Sroczynska, VA Cruickshank, JP Bukowski, S Miyagi, FO Bagger, ... Blood, The Journal of the American Society of Hematology 123 (12), 1870-1882, 2014 | 98 | 2014 |
| Telomerase inhibition effectively targets mouse and human AML stem cells and delays relapse following chemotherapy C Bruedigam, FO Bagger, FH Heidel, CP Kuhn, S Guignes, A Song, ... Cell stem cell 15 (6), 775-790, 2014 | 95 | 2014 |
| ERG promotes the maintenance of hematopoietic stem cells by restricting their differentiation KJ Knudsen, M Rehn, MS Hasemann, N Rapin, FO Bagger, E Ohlsson, ... Genes & development 29 (18), 1915-1929, 2015 | 94 | 2015 |
| A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data M Gabrielaite, MH Torp, MS Rasmussen, S Andreu-Sánchez, FG Vieira, ... Cancers 13 (24), 6283, 2021 | 91 | 2021 |
| HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, LA Thoren, ... Nucleic acids research 41 (D1), D1034-D1039, 2013 | 91 | 2013 |
| A gain-of-function p53-mutant oncogene promotes cell fate plasticity and myeloid leukemia through the pluripotency factor FOXH1 E Loizou, A Banito, G Livshits, YJ Ho, RP Koche, FJ Sánchez-Rivera, ... Cancer discovery 9 (7), 962-979, 2019 | 83 | 2019 |
| Identification and validation of 174 COVID-19 vaccine candidate epitopes reveals low performance of common epitope prediction tools M Prachar, S Justesen, DB Steen-Jensen, S Thorgrimsen, E Jurgons, ... Scientific reports 10 (1), 20465, 2020 | 65 | 2020 |
| The splicing factor RBM25 controls MYC activity in acute myeloid leukemia Y Ge, MB Schuster, S Pundhir, N Rapin, FO Bagger, N Sidiropoulos, ... Nature communications 10 (1), 172, 2019 | 63 | 2019 |
| SinaPlot: an enhanced chart for simple and truthful representation of single observations over multiple classes N Sidiropoulos, SH Sohi, TL Pedersen, BT Porse, O Winther, N Rapin, ... Journal of Computational and Graphical Statistics 27 (3), 673-676, 2018 | 54 | 2018 |
| Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly HJ Genee, MT Bonde, FO Bagger, JB Jespersen, MOA Sommer, ... ACS Synthetic Biology 4 (3), 342-349, 2015 | 54 | 2015 |
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