Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition IM Flyamer, J Gassler, M Imakaev, HB Brandão, SV Ulianov, N Abdennur, ... Nature 544 (7648), 110-114, 2017 | 382 | 2017 |
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains SV Ulianov, EE Khrameeva, AA Gavrilov, IM Flyamer, P Kos, ... Genome research 26 (1), 70-84, 2016 | 247 | 2016 |
A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture J Gassler, HB Brandão, M Imakaev, IM Flyamer, S Ladstätter, ... The EMBO journal 36 (24), 3600-3618, 2017 | 149 | 2017 |
Developmentally regulated Shh expression is robust to TAD perturbations I Williamson, L Kane, PS Devenney, IM Flyamer, E Anderson, ... Development 146 (19), 2019 | 36 | 2019 |
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila SV Ulianov, SA Doronin, EE Khrameeva, PI Kos, AV Luzhin, SS Starikov, ... Nature communications 10 (1), 1-11, 2019 | 36 | 2019 |
DNA methylation directs polycomb-dependent 3D genome re-organization in naive pluripotency K McLaughlin, IM Flyamer, JP Thomson, HK Mjoseng, R Shukla, ... Cell reports 29 (7), 1974-1985. e6, 2019 | 22 | 2019 |
Coolpup.py: versatile pile-up analysis of Hi-C data IM Flyamer, RS Illingworth, WA Bickmore Bioinformatics 36 (10), 2980-2985, 2020 | 15* | 2020 |
A central role for canonical PRC1 in shaping the 3D nuclear landscape S Boyle, IM Flyamer, I Williamson, D Sengupta, WA Bickmore, ... Genes & development 34 (13-14), 931-949, 2020 | 13 | 2020 |
Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure SV Ulianov, AA Galitsyna, IM Flyamer, AK Golov, EE Khrameeva, ... Epigenetics & chromatin 10 (1), 1-19, 2017 | 12 | 2017 |
Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes AV Luzhin, IM Flyamer, EE Khrameeva, SV Ulianov, SV Razin, ... Journal of cellular biochemistry 120 (3), 4494-4503, 2019 | 11 | 2019 |
Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells DS Dunican, HK Mjoseng, L Duthie, IM Flyamer, WA Bickmore, ... BMC biology 18 (1), 1-21, 2020 | 6 | 2020 |
Evolution of the genome 3D organization: comparison of fused and segregated globin gene clusters AP Kovina, NV Petrova, ES Gushchanskaya, KV Dolgushin, ... Molecular biology and evolution 34 (6), 1492-1504, 2017 | 6 | 2017 |
C-TALE, a new cost-effective method for targeted enrichment of Hi-C/3C-seq libraries AK Golov, SV Ulianov, AV Luzhin, EP Kalabusheva, OL Kantidze, ... Methods 170, 48-60, 2020 | 4 | 2020 |
Single-nucleus Hi-C of mammalian oocytes and zygotes J Gassler, IM Flyamer, K Tachibana Methods in cell biology 144, 389-407, 2018 | 4 | 2018 |
Low Level of Expression of C-Terminally Truncated Human FUS Causes Extensive Changes in the Spinal Cord Transcriptome of Asymptomatic Transgenic Mice EA Lysikova, S Funikov, AP Rezvykh, KD Chaprov, MS Kukharsky, ... Neurochemical research, 1-12, 2020 | 2 | 2020 |
Nuclear organisation and replication timing are coupled through RIF1-PP1 interaction S Gnan, IM Flyamer, KN Klein, E Castelli, A Rapp, A Maiser, N Chen, ... bioRxiv, 812156, 2020 | 2 | 2020 |
MCM complexes are barriers that restrict cohesin-mediated loop extrusion BJH Dequeker, HB Brandao, MJ Scherr, J Gassler, S Powell, I Gaspar, ... bioRxiv, 2020 | 1 | 2020 |
A Mechanism of Cohesin-Dependent Loop Extrusion Organizes Mammalian Chromatin Structure in the Developing Embryo HB Brandão, J Gassler, M Imakaev, IM Flyamer, S Ladstätter, ... Biophysical Journal 114 (3), 255a, 2018 | | 2018 |
Reconfiguration of extended DNA fragment harboring alpha-globin gene domain in chicken erythroid cells. SV Ulianov, AA Galitzina, IM Flyamer, EE Khrameeva, SV Razin Biopolymers & Cell, 2015 | | 2015 |
Analysis of chromatin spatial structure in four Drosophilamelanogaster cell lines of different origin SV Ulianov, EE Khrameeva, AA Gavrilov, I Flyamer, MD Logacheva, ... Molecular Control of Gene Expression, 19-19, 2015 | | 2015 |