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İlknur Karadeniz
İlknur Karadeniz
Assistant Professor at Özyeğin University
Verified email at ozyegin.edu.tr - Homepage
Title
Cited by
Cited by
Year
PHISTO: pathogen–host interaction search tool
S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ...
Bioinformatics 29 (10), 1357-1358, 2013
1562013
Linking entities through an ontology using word embeddings and syntactic re-ranking
I Karadeniz, A Özgür
BMC bioinformatics 20, 1-12, 2019
342019
Bacteria biotope detection, ontology-based normalization, and relation extraction using syntactic rules
I Karadeniz, A Özgür
Proceedings of the BioNLP Shared Task 2013 Workshop, 170-177, 2013
172013
Detection and categorization of bacteria habitats using shallow linguistic analysis
İ Karadeniz, A Özgür
BMC bioinformatics 16, 1-14, 2015
102015
Literature mining and ontology based analysis of host-Brucella gene–gene interaction network
I Karadeniz, J Hur, Y He, A Özgür
Frontiers in microbiology 6, 152779, 2015
92015
BOUN-ISIK participation: an unsupervised approach for the named entity normalization and relation extraction of bacteria biotopes
I Karadeniz, ÖF Tuna, A Özgür
Proceedings of the 5th workshop on BioNLP open shared tasks, 150-157, 2019
52019
Graph convolutional network based virus-human protein-protein interaction prediction for novel viruses
MB Koca, E Nourani, F Abbasoğlu, İ Karadeniz, FE Sevilgen
Computational Biology and Chemistry 101, 107755, 2022
22022
ISIKUN at the FinCausal 2020: linguistically informed machine-learning approach for causality identification in financial documents
G Özenir, İ Karadeniz
Proceedings of the 1st Joint Workshop on Financial Narrative Processing and …, 2020
22020
PHISTO: pathogen-host interaction search tool
SD Tekir, T Cakir, E Ardic, AS Sayilirbas, G Konuk, M Konuk, H Sariyer, ...
Bioinformatics 29 (10), 1357-1358, 2013
22013
Generating Java Class Skeleton Using a Natural Language Interface.
E Ozcan, SE Seker, ZI Karadeniz
NLUCS, 126-134, 2004
22004
ISIKSumm at BioLaySumm Task 1: BART-based Summarization System Enhanced with Bio-Entity Labels
Ç Çolak, İ Karadeniz
In The 22nd Workshop on Biomedical Natural Language Processing and BioNLP …, 2023
2023
Çizge evrişim ağı kullanarak patojen-konak ağlarında protein etkileşim tahmini
MB Koca, İ Karadeniz, E Nourani, FE Sevilgen
IEEE, 2021
2021
PHISTO: A New Web Platform for Pathogen-Human Interactions
SD Tekir, T Çakır, E Ardıç, İ Karadeniz, A Özgür, FE Sevilgen, KÖ Ülgen
Computational Methods in Systems Biology: 11th International Conference …, 2013
2013
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