Deena M.A. Gendoo

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Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Levi WaldronCity University of New York Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu
Anna GoldenbergScientist, SickKids Research Institute; Assistant Professor Department of Computer Science, University of TorontoVerified email at utoronto.ca
Paul M. HarrisonProfessor of Biology, McGill UniversityVerified email at mcgill.ca
Joel ParkerUniversity of North Carolina at Chapel HillVerified email at email.unc.edu
Mathieu Lupien, Ph.D.Senior Scientist/Professor, Princess Margaret Cancer CentreVerified email at uhnresearch.ca
Andrew H. BeckCo-Founder and CEO at PathAIVerified email at PathAI.com
Eldad ZacksenhausProfessor of Medicine, University of TorontoVerified email at utoronto.ca
Markus S. SchröderETH ZürichVerified email at biol.ethz.ch
Heather SelbyStanford UniversityVerified email at stanford.edu
Hugo AertsDirector AI in Medicine (AIM) @ Harvard-MGB | Professor @ MaastrichtUVerified email at dfci.harvard.edu
Patrick GrossmannPh.D. Candidate conducting research at Harvard Medical School, Dana-Farber Cancer Institute, BWHVerified email at jimmy.harvard.edu
Sepehr EhsaniUniversity College LondonVerified email at ucl.ac.uk
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Robert Castelo (0000-0003-2229-4508)Associate Professor, Universitat Pompeu Fabra (ROR 04n0g0b29), BarcelonaVerified email at upf.edu
David Gomez-CabreroAssoc. Professor KAUST. Head of the Translational Bioinformatics Unit, Navarrabiomed.Verified email at kaust.edu.sa
Aedin CulhaneUniversity of Limerick School of MedicineVerified email at ul.ie
Sean DavisUniversity of ColoradoVerified email at cuanschutz.edu
Kasper D. HansenDepartment of Biostatistics, Johns Hopkins UniversityVerified email at jhsph.edu

Deena M.A. Gendoo

Associate Professor in Computational Biology, University of Birmingham

Verified email at bham.ac.uk - Homepage

Bioinformatics Computational Biology Cancer Disease Models Pharmacogenomics


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Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer DMA Gendoo, N Ratanasirigulchai, MS Schröder, L Paré, JS Parker, ... Bioinformatics 32 (7), 1097-1099, 2016	308	2016
PharmacoGx: an R package for analysis of large pharmacogenomic datasets P Smirnov, Z Safikhani, N El-Hachem, D Wang, A She, C Olsen, ... Bioinformatics 32 (8), 1244-1246, 2016	270	2016
Integrated (epi)-genomic analyses identify subgroup-specific therapeutic targets in CNS rhabdoid tumors J Torchia, B Golbourn, S Feng, KC Ho, P Sin-Chan, A Vasiljevic, ... Cancer cell 30 (6), 891-908, 2016	236	2016
CD73 is associated with poor prognosis in high-grade serous ovarian cancer M Turcotte, K Spring, S Pommey, G Chouinard, I Cousineau, J George, ... Cancer research 75 (21), 4494-4503, 2015	234	2015
Consensus on molecular subtypes of high-grade serous ovarian carcinoma GM Chen, L Kannan, L Geistlinger, V Kofia, Z Safikhani, DMA Gendoo, ... Clinical Cancer Research 24 (20), 5037-5047, 2018	123	2018
The molecular basis of breast cancer pathological phenotypes YJ Heng, SC Lester, GMK Tse, RE Factor, KH Allison, LC Collins, ... The Journal of pathology 241 (3), 375-391, 2017	120	2017
Medulloblastoma subgroups remain stable across primary and metastatic compartments X Wang, AM Dubuc, V Ramaswamy, S Mack, DMA Gendoo, M Remke, ... Acta neuropathologica 129, 449-457, 2015	102	2015
Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancer DMA Gendoo, RE Denroche, A Zhang, N Radulovich, GH Jang, M Lemire, ... PLoS computational biology 15 (1), e1006596, 2019	63	2019
Public data and open source tools for multi-assay genomic investigation of disease L Kannan, M Ramos, A Re, N El-Hachem, Z Safikhani, DMA Gendoo, ... Briefings in bioinformatics 17 (4), 603-615, 2016	61	2016
A subgroup of microRNAs defines PTEN-deficient, triple-negative breast cancer patients with poorest prognosis and alterations in RB1, MYC, and Wnt signaling DY Wang, DMA Gendoo, Y Ben-David, JR Woodgett, E Zacksenhaus Breast cancer research 21, 1-13, 2019	43	2019
MetaGxData: clinically annotated breast, ovarian and pancreatic cancer datasets and their use in generating a multi-cancer gene signature DMA Gendoo, M Zon, V Sandhu, VSK Manem, N Ratanasirigulchai, ... Scientific reports 9 (1), 8770, 2019	41	2019
Integrative cancer pharmacogenomics to infer large-scale drug taxonomy N El-Hachem, DMA Gendoo, LS Ghoraie, Z Safikhani, P Smirnov, ... Cancer research 77 (11), 3057-3069, 2017	41	2017
Discordant and chameleon sequences: their distribution and implications for amyloidogenicity DMA Gendoo, PM Harrison Protein Science 20 (3), 567-579, 2011	33	2011
Modeling germline mutations in pineoblastoma uncovers lysosome disruption-based therapy PED Chung, DMA Gendoo, R Ghanbari-Azarnier, JC Liu, Z Jiang, J Tsui, ... Nature communications 11 (1), 1825, 2020	32	2020
The first small-molecule inhibitors of members of the ribonuclease E family L Kime, HA Vincent, DMA Gendoo, SS Jourdan, CWG Fishwick, ... Scientific reports 5 (1), 8028, 2015	32	2015
PrionHome: a database of prions and other sequences relevant to prion phenomena D Harbi, M Parthiban, DMA Gendoo, S Ehsani, M Kumar, G Schmitt-Ulms, ... PloS one 7 (2), e31785, 2012	32	2012
Administration of hypoxia-activated prodrug evofosfamide after conventional adjuvant therapy enhances therapeutic outcome and targets cancer-initiating cells in preclinical … J Haynes, TD McKee, A Haller, Y Wang, C Leung, DMA Gendoo, ... Clinical Cancer Research 24 (9), 2116-2127, 2018	23	2018
The anti-tumour activity of DNA methylation inhibitor 5-aza-2′-deoxycytidine is enhanced by the common analgesic paracetamol through induction of oxidative stress HJ Gleneadie, AH Baker, N Batis, J Bryant, Y Jiang, SJH Clokie, ... Cancer letters 501, 172-186, 2021	14	2021
Personalized diagnosis of medulloblastoma subtypes across patients and model systems DMA Gendoo, P Smirnov, M Lupien, B Haibe-Kains Genomics 106 (2), 96-106, 2015	14	2015
The landscape of the prion protein's structural response to mutation revealed by principal component analysis of multiple NMR ensembles DMA Gendoo, PM Harrison Public Library of Science 8 (8), e1002646, 2012	14	2012

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