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Shima Arasteh
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Tryptic stability of synthetic bactenecin derivatives is determined by the side chain length of cationic residues and the peptide conformation
M Bagheri, S Arasteh, EF Haney, REW Hancock
Journal of medicinal chemistry 59 (7), 3079-3086, 2016
342016
The transition between active and inactive conformations of Abl kinase studied by rock climbing and Milestoning
B Narayan, A Fathizadeh, C Templeton, P He, S Arasteh, R Elber, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1864 (4), 129508, 2020
302020
Bacterial aggregation triggered by fibril forming tryptophan-rich sequences: effects of peptide side chain and membrane phospholipids
M Bagheri, H Nikolenko, S Arasteh, N Rezaei, M Behzadi, M Dathe, ...
ACS applied materials & interfaces 12 (24), 26852-26867, 2020
222020
Molecular Dynamics Simulation and Analysis of the Antimicrobial Peptide–Lipid Bilayer Interactions
S Arasteh, M Bagheri
Antimicrobial Peptides: Methods and Protocols, 103-118, 2017
142017
Palmitoylation of membrane-penetrating magainin derivatives reinforces necroptosis in A549 cells dependent on peptide conformational propensities
M Behzadi, S Arasteh, M Bagheri
ACS Applied Materials & Interfaces 12 (51), 56815-56829, 2020
132020
Conformational free energy changes via an alchemical path without reaction coordinates
P He, BW Zhang, S Arasteh, L Wang, R Abel, RM Levy
The journal of physical chemistry letters 9 (15), 4428-4435, 2018
132018
The UWHAM and SWHAM software package
BW Zhang, S Arasteh, RM Levy
Scientific reports 9 (1), 1-9, 2019
122019
Protein loop conformational free energy changes via an alchemical path without reaction coordinates
S Arasteh, BW Zhang, RM Levy
The journal of physical chemistry letters 12 (18), 4368-4377, 2021
42021
MEMBRANE SELECTIVITY OF SMALL CYCLIC ANTIMICROBIAL HEXAPEPTIDES STUDIED BY MOLECULAR DYNAMICS SIMULATION
S Arasteh, M Bagheri, B Goliaei
JOURNAL OF PEPTIDE SCIENCE 20, S279-S280, 2014
12014
Mapping Free Energy Landscapes of Proteins with Application to Kinase Catalytic Domains
S Arasteh
Temple University, 2021
2021
Protein Kinase Free Energy Landscapes: The Role of the Activation Loop
S Arasteh, P He, A Haldane, RM Levy
Biophysical Journal 116 (3), 436a, 2019
2019
Protein Conformational Free Energy Changes Via an Alchemical Pathway
P He, B Zhang, S Arasteh, L Wang, R Abel, RM Levy
PROTEIN SCIENCE 27, 244-245, 2018
2018
STRUCTURAL AND THERMODYNAMIC CHARACTERIZATION OF TRYPSIN-RESISTANT CATHELICIDIN DERIVED ANTIMICROBIAL PEPTIDES
M Bagheri, EF Haney, S Arasteh, EW Hancock
JOURNAL OF PEPTIDE SCIENCE 20, S70-S70, 2014
2014
Molecular Dynamics Simulation Studies of Antimicrobial Cyclo-RRRWFW and Its Analogs in Water and POPC Bilayers
S Arasteh, M Bagheri, B Goliaei
1st Tabriz International Life Science Conference and 12th Iran Biophysical …, 2013
2013
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Articles 1–14