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Eran Agmon
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Modeling the effects of lipid peroxidation during ferroptosis on membrane properties
E Agmon, J Solon, P Bassereau, BR Stockwell
Scientific reports 8 (1), 1-11, 2018
1532018
Open-ended evolution: Perspectives from the OEE workshop in York
T Taylor, M Bedau, A Channon, D Ackley, W Banzhaf, G Beslon, E Dolson, ...
Artificial life 22 (3), 408-423, 2016
1172016
Lipid homeostasis and regulated cell death
E Agmon, BR Stockwell
Current Opinion in Chemical Biology 39, 83-89, 2017
982017
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation
DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ...
Science 369 (6502), eaav3751, 2020
752020
Exploring the space of viable configurations in a model of metabolism–boundary co-construction
E Agmon, AJ Gates, V Churavy, RD Beer
Artificial life 22 (2), 153-171, 2016
23*2016
The evolution and analysis of action switching in embodied agents
E Agmon, RD Beer
Adaptive Behavior, 1059712313511649, 2014
23*2014
The structure of ontogenies in a model protocell
E Agmon, AJ Gates, RD Beer
Artificial life 22 (4), 499-517, 2016
19*2016
Lineage selection leads to evolvability at large population sizes
N Virgo, E Agmon, C Fernando
ECAL 2017, the Fourteenth European Conference on Artificial Life, 420-427, 2017
92017
A Multi-Scale Approach to Modeling E. coli Chemotaxis
E Agmon, RK Spangler
Entropy 22 (10), 1101, 2020
82020
Vivarium: an interface and engine for integrative multiscale modeling in computational biology
E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ...
Bioinformatics 38 (7), 1972-1979, 2022
62022
Whole-colony modeling of Escherichia coli
CJ Skalnik, E Agmon, RK Spangler, L Talman, JH Morrison, SM Peirce, ...
bioRxiv, 2021
52021
Multiscale models of infection
L Talman, E Agmon, SM Peirce, MW Covert
Current Opinion in Biomedical Engineering 11, 102-108, 2019
52019
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
22022
A forecast for large-scale, predictive biology: Lessons from meteorology
MW Covert, TE Gillies, T Kudo, E Agmon
Cell Systems 12 (6), 488-496, 2021
22021
Deriving the bodily grounding of living beings with molecular autopoiesis
E Agmon
Adaptive Behavior 28 (1), 35-36, 2020
22020
The biological foundations of enactivism: A report on a workshop held at Artificial Life XV
E Agmon, M Egbert, N Virgo
Artificial life 24 (1), 49-55, 2018
22018
Structural coupling of a Potts model cell
E Agmon, JA Glazier, RD Beer
ECAL 2017, the Fourteenth European Conference on Artificial Life, 13-20, 2017
12017
180 T cell phenotype drives restructuring of tumor microenvironment to balance T cell longevity and tumor control: insights from multiplexed imaging and multi-scale agent based …
J Hickey, G Nolan, M Covert, E Agmon, N Horowitz, J Sunwoo
Journal for ImmunoTherapy of Cancer 9 (Suppl 2), 2021
2021
Supplementary Materials for Vivarium: an interface and engine for integrative multiscale modeling in computational biology
E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ...
2021
BUILDING WHOLE-CELL COMPUTATIONAL MODELS TO PREDICT CELLULAR PHENOTYPES AND ACCELERATE DISCOVERY
MW COVERT, E AGMON
Computational Modeling: From Chemistry To Materials To Biology-Proceedings …, 2020
2020
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Articles 1–20