| Modeling the effects of lipid peroxidation during ferroptosis on membrane properties E Agmon, J Solon, P Bassereau, BR Stockwell Scientific reports 8 (1), 5155, 2018 | 315 | 2018 |
| Open-ended evolution: Perspectives from the OEE workshop in York T Taylor, M Bedau, A Channon, D Ackley, W Banzhaf, G Beslon, E Dolson, ... Artificial life 22 (3), 408-423, 2016 | 159 | 2016 |
| Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ... Science 369 (6502), eaav3751, 2020 | 151 | 2020 |
| Lipid homeostasis and regulated cell death E Agmon, BR Stockwell Current Opinion in Chemical Biology 39, 83-89, 2017 | 138 | 2017 |
| The evolution and analysis of action switching in embodied agents E Agmon, RD Beer Adaptive Behavior, 1059712313511649, 2014 | 31* | 2014 |
| The structure of ontogenies in a model protocell E Agmon, AJ Gates, RD Beer Artificial life 22 (4), 499-517, 2016 | 28* | 2016 |
| Exploring the space of viable configurations in a model of metabolism–boundary co-construction E Agmon, AJ Gates, V Churavy, RD Beer Artificial Life 22 (2), 153-171, 2016 | 27* | 2016 |
| Vivarium: an interface and engine for integrative multiscale modeling in computational biology E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ... Bioinformatics 38 (7), 1972-1979, 2022 | 25 | 2022 |
| BioSimulators: a central registry of simulation engines and services for recommending specific tools B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ... Nucleic acids research 50 (W1), W108-W114, 2022 | 22 | 2022 |
| Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses CJ Skalnik, SY Cheah, MY Yang, MB Wolff, RK Spangler, L Talman, ... PLOS Computational Biology 19 (6), e1011232, 2023 | 15* | 2023 |
| Modeling the effects of lipid peroxidation during ferroptosis on membrane properties. Sci Rep 8: 5155 E Agmon, J Solon, P Bassereau, BR Stockwell | 14 | 2018 |
| Lineage selection leads to evolvability at large population sizes N Virgo, E Agmon, C Fernando Artificial Life Conference Proceedings, 420-427, 2017 | 13 | 2017 |
| A Multi-Scale Approach to Modeling E. coli Chemotaxis E Agmon, RK Spangler Entropy 22 (10), 1101, 2020 | 12 | 2020 |
| Building the next generation of virtual cells to understand cellular biology GT Johnson, E Agmon, M Akamatsu, E Lundberg, B Lyons, W Ouyang, ... Biophysical Journal 122 (18), 3560-3569, 2023 | 11 | 2023 |
| Multiscale models of infection L Talman, E Agmon, SM Peirce, MW Covert Current Opinion in Biomedical Engineering 11, 102-108, 2019 | 10 | 2019 |
| T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response JW Hickey, M Haist, N Horowitz, C Caraccio, Y Tan, AJ Rech, ... Cell Reports 42 (12), 2023 | 7 | 2023 |
| A forecast for large-scale, predictive biology: Lessons from meteorology MW Covert, TE Gillies, T Kudo, E Agmon Cell systems 12 (6), 488-496, 2021 | 5 | 2021 |
| Deriving the bodily grounding of living beings with molecular autopoiesis E Agmon Adaptive Behavior 28 (1), 35-36, 2020 | 3 | 2020 |
| The biological foundations of enactivism: A report on a workshop held at Artificial Life XV E Agmon, M Egbert, N Virgo Artificial life 24 (1), 49-55, 2018 | 3 | 2018 |
| Integrating multiplexed imaging and multiscale modeling identifies tumor phenotype conversion as a critical component of therapeutic T cell efficacy JW Hickey, E Agmon, N Horowitz, TK Tan, M Lamore, JB Sunwoo, ... Cell Systems 15 (4), 322-338. e5, 2024 | 2 | 2024 |
Markus CovertStanford UniversityVerified email at stanford.edu
