Marcel H Schulz
Marcel H Schulz
Professor of Computational Biology, Goethe University Frankfurt, Germany
Verified email at em.uni-frankfurt.de - Homepage
TitleCited byYear
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
K Ye, MH Schulz, Q Long, R Apweiler, Z Ning
Bioinformatics 25 (21), 2865-2871, 2009
13902009
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
M Sultan, MH Schulz, H Richard, A Magen, A Klingenhoff, M Scherf, ...
Science 321 (5891), 956-960, 2008
13252008
Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels
MH Schulz, DR Zerbino, M Vingron, E Birney
Bioinformatics, 2012
12502012
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
4252013
Clinical diagnostics in human genetics with semantic similarity searches in ontologies
S Köhler, MH Schulz, P Krawitz, S Bauer, S Dölken, CE Ott, C Mundlos, ...
The American Journal of Human Genetics 85 (4), 457-464, 2009
3022009
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
H Richard, MH Schulz, M Sultan, A Nürnberger, S Schrinner, D Balzereit, ...
Nucleic Acids Research 38 (10), e112-e112, 2010
1842010
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
HG Stunnenberg, M Hirst, International Human Epigenome Consortium
Cell 167 (5), 1145-1149, 2016
1512016
Mapping translocation breakpoints by next-generation sequencing
W Chen, V Kalscheuer, A Tzschach, C Menzel, R Ullmann, MH Schulz, ...
Genome research 18 (7), 1143-1149, 2008
1492008
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data
MH Schulz, WE Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph
BMC Systems Biology 6 (1), 104, 2012
882012
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development
P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M de Almeida, ...
Immunity 45 (5), 1148-1161, 2016
812016
Probabilistic error correction for RNA sequencing
HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph
Nucleic acids research 41 (10), e109-e109, 2013
772013
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS
AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ...
Bioinformatics, 2012
652012
Fiona: a parallel and automatic strategy for read error correction
MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ...
Bioinformatics 30 (17), i356-i363, 2014
602014
Reconstructing dynamic microRNA-regulated interaction networks
MH Schulz, KV Pandit, CLL Cardenas, N Ambalavanan, N Kaminski, ...
Proceedings of the National Academy of Sciences 110 (39), 15686-15691, 2013
562013
Estimation of Pairwise Sequence Similarity of Mammalian Enhancers with Word Neighbourhood Counts
J Göke, MH Schulz, J Lasserre, M Vingron
Bioinformatics, 2012
482012
DECOD: fast and accurate discriminative DNA motif finding
P Huggins, S Zhong, I Shiff, R Beckerman, O Laptenko, C Prives, ...
Bioinformatics 27 (17), 2361-2367, 2011
482011
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
F Schmidt, N Gasparoni, G Gasparoni, K Gianmoena, C Cadenas, ...
Nucleic acids research 45 (1), 54-66, 2017
442017
Bayesian Ontology Querying for Accurate and Noise-Tolerant Semantic Searches
S Bauer, S Köhler, MH Schulz, PN Robinson
Bioinformatics, 2012
432012
Methods for searching with semantic similarity scores in one or more ontologies
PN Robinson, MH Schulz, S Bauer, S Köhler
US Patent 9,002,857, 2015
382015
Methods for searching with semantic similarity scores in one or more ontologies
PN Robinson, MH Schulz, S Bauer, S Köhler
US Patent App. 12/461,517, 2009
38*2009
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Articles 1–20