Kai Dührkop
Kai Dührkop
PhD, Lehrstuhl Bioinformatik, Friedrich-Schiller Universität Jena
Verified email at uni-jena.de - Homepage
Cited by
Cited by
Searching molecular structure databases with tandem mass spectra using CSI: FingerID
K Dührkop, H Shen, M Meusel, J Rousu, S Böcker
Proceedings of the National Academy of Sciences 112 (41), 12580-12585, 2015
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
Critical assessment of small molecule identification 2016: automated methods
EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ...
Journal of cheminformatics 9 (1), 22, 2017
Fragmentation trees reloaded
S Böcker, K Dührkop
Journal of cheminformatics 8 (1), 5, 2016
Significance estimation for large scale metabolomics annotations by spectral matching
K Scheubert, F Hufsky, D Petras, M Wang, LF Nothias, K Dührkop, ...
Nature communications 8 (1), 1-10, 2017
Metabolite identification through multiple kernel learning on fragmentation trees
H Shen, K Dührkop, S Böcker, J Rousu
Bioinformatics 30 (12), i157-i164, 2014
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature Methods 17 (9), 905-908, 2020
Fast metabolite identification with input output kernel regression
C Brouard, H Shen, K Dührkop, F d'Alché-Buc, S Böcker, J Rousu
Bioinformatics 32 (12), i28-i36, 2016
Current challenges in plant eco-metabolomics
K Peters, A Worrich, A Weinhold, O Alka, G Balcke, C Birkemeyer, ...
International journal of molecular sciences 19 (5), 1385, 2018
Molecular formula identification with SIRIUS
K Dührkop, K Scheubert, S Böcker
Metabolites 3 (2), 506-516, 2013
Molecular formula identification using isotope pattern analysis and calculation of fragmentation trees
K Dührkop, F Hufsky, S Böcker
Mass Spectrometry 3 (Special_Issue_2), S0037-S0037, 2014
Fast alignment of fragmentation trees
F Hufsky, K Dührkop, F Rasche, M Chimani, S Böcker
Bioinformatics 28 (12), i265-i273, 2012
Bayesian networks for mass spectrometric metabolite identification via molecular fingerprints
M Ludwig, K Dührkop, S Böcker
Bioinformatics 34 (13), i333-i340, 2018
Fragmentation trees reloaded
K Dührkop, S Böcker
International Conference on Research in Computational Molecular Biology, 65-79, 2015
Speedy colorful subtrees
WTJ White, S Beyer, K Dührkop, M Chimani, S Böcker
International Computing and Combinatorics Conference, 310-322, 2015
Faster mass decomposition
K Dührkop, M Ludwig, M Meusel, S Böcker
International Workshop on Algorithms in Bioinformatics, 45-58, 2013
Heuristic algorithms for the maximum colorful subtree problem
K Dührkop, MA Lataretu, WTJ White, S Böcker
arXiv preprint arXiv:1801.07456, 2018
Classes for the masses: Systematic classification of unknowns using fragmentation spectra
K Dührkop, LF Nothias, M Fleischauer, M Ludwig, MA Hoffmann, J Rousu, ...
bioRxiv, 2020
Ion Identity Molecular Networking in the GNPS Environment
R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ...
bioRxiv, 2020
Computational methods for small molecule identification
K Dührkop
it-Information Technology 61 (5-6), 285-292, 2019
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