| Roary: rapid large-scale prokaryote pan genome analysis AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ... Bioinformatics 31 (22), 3691-3693, 2015 | 4288 | 2015 |
| Genome sequence of Yersinia pestis, the causative agent of plague J Parkhill, BW Wren, NR Thomson, RW Titball, MTG Holden, MB Prentice, ... Nature 413 (6855), 523-527, 2001 | 1543 | 2001 |
| Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 J Parkhill, G Dougan, KD James, NR Thomson, D Pickard, J Wain, ... Nature 413 (6858), 848-852, 2001 | 1511 | 2001 |
| Evolution of MRSA during hospital transmission and intercontinental spread SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ... Science 327 (5964), 469-474, 2010 | 1273 | 2010 |
| Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance MTG Holden, EJ Feil, JA Lindsay, SJ Peacock, NPJ Day, MC Enright, ... Proceedings of the National Academy of Sciences 101 (26), 9786-9791, 2004 | 1218 | 2004 |
| Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study L García-Álvarez, MTG Holden, H Lindsay, CR Webb, DFJ Brown, ... The Lancet infectious diseases 11 (8), 595-603, 2011 | 1196 | 2011 |
| Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica J Parkhill, M Sebaihia, A Preston, LD Murphy, N Thomson, DE Harris, ... Nature genetics 35 (1), 32-40, 2003 | 1185 | 2003 |
| The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome M Sebaihia, BW Wren, P Mullany, NF Fairweather, N Minton, R Stabler, ... Nature genetics 38 (7), 779-786, 2006 | 1047 | 2006 |
| Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei MTG Holden, RW Titball, SJ Peacock, AM Cerdeño-Tárraga, T Atkins, ... Proceedings of the National Academy of Sciences 101 (39), 14240-14245, 2004 | 930 | 2004 |
| Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ... New England Journal of Medicine 366 (24), 2267-2275, 2012 | 787 | 2012 |
| Quorum‐sensing cross talk: isolation and chemical characterization of cyclic dipeptides from Pseudomonas aeruginosa and other Gram‐negative bacteria MTG Holden, S Ram Chhabra, R De Nys, P Stead, NJ Bainton, PJ Hill, ... Molecular microbiology 33 (6), 1254-1266, 1999 | 721 | 1999 |
| Staphylococcus aureus: superbug, super genome? JA Lindsay, MTG Holden Trends in microbiology 12 (8), 378-385, 2004 | 683 | 2004 |
| Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study SR Harris, EJP Cartwright, ME Török, MTG Holden, NM Brown, ... The Lancet infectious diseases, 2012 | 665 | 2012 |
| Routine use of microbial whole genome sequencing in diagnostic and public health microbiology CU Köser, MJ Ellington, EJP Cartwright, SH Gillespie, NM Brown, ... Public Library of Science 8 (8), e1002824, 2012 | 653 | 2012 |
| Microreact: visualizing and sharing data for genomic epidemiology and phylogeography S Argimón, K Abudahab, RJE Goater, A Fedosejev, J Bhai, C Glasner, ... Microbial genomics 2 (11), e000093, 2016 | 624 | 2016 |
| The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee MJ Ellington, O Ekelund, FM Aarestrup, R Canton, M Doumith, C Giske, ... Clinical microbiology and infection 23 (1), 2-22, 2017 | 523 | 2017 |
| A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome research 23 (4), 653-664, 2013 | 521 | 2013 |
| Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors KS Bell, M Sebaihia, L Pritchard, MTG Holden, LJ Hyman, MC Holeva, ... Proceedings of the National Academy of Sciences 101 (30), 11105-11110, 2004 | 501 | 2004 |
| SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway BJ Willett, J Grove, OA MacLean, C Wilkie, G De Lorenzo, W Furnon, ... Nature microbiology 7 (8), 1161-1179, 2022 | 459 | 2022 |
| Comparisons of dN/dS are time dependent for closely related bacterial genomes EPC Rocha, JM Smith, LD Hurst, MTG Holden, JE Cooper, NH Smith, ... Journal of Theoretical Biology 239 (2), 226-235, 2006 | 458 | 2006 |
Stephen BentleyWellcome Sanger InstituteVerified email at sanger.ac.uk
