Zachary Lewis
Zachary Lewis
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Cited by
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Rapid SNP discovery and genetic mapping using sequenced RAD markers
NA Baird, PD Etter, TS Atwood, MC Currey, AL Shiver, ZA Lewis, ...
PloS one 3 (10), e3376, 2008
Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi
HC Lee, L Li, W Gu, Z Xue, SK Crosthwaite, A Pertsemlidis, ZA Lewis, ...
Molecular cell 38 (6), 803-814, 2010
Multiple oscillators regulate circadian gene expression in Neurospora
A Correa, ZA Lewis, AV Greene, IJ March, RH Gomer, D Bell-Pedersen
Proceedings of the National Academy of Sciences 100 (23), 13597-13602, 2003
Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa
ZA Lewis, S Honda, TK Khlafallah, JK Jeffress, M Freitag, F Mohn, ...
Genome research 19 (3), 427-437, 2009
vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation
LB Shrode, ZA Lewis, LD White, D Bell-Pedersen, DJ Ebbole
Fungal Genetics and Biology 32 (3), 169-181, 2001
Regional control of histone H3 lysine 27 methylation in Neurospora
K Jamieson, MR Rountree, ZA Lewis, JE Stajich, EU Selker
Proceedings of the National Academy of Sciences 110 (15), 6027-6032, 2013
Overexpression of White Collar‐1 (WC‐1) activates circadian clock‐associated genes, but is not sufficient to induce most light‐regulated gene expression in Neurospora crassa
ZA Lewis, A Correa, C Schwerdtfeger, KL Link, X Xie, RH Gomer, ...
Molecular microbiology 45 (4), 917-931, 2002
CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency
WJ Belden, ZA Lewis, EU Selker, JJ Loros, JC Dunlap
PLoS Genet 7 (7), e1002166, 2011
DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC
ZA Lewis, KK Adhvaryu, S Honda, AL Shiver, M Knip, R Sack, EU Selker
PLoS Genet 6 (11), e1001196, 2010
Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa
X Xie, HH Wilkinson, A Correa, ZA Lewis, D Bell-Pedersen, DJ Ebbole
Fungal genetics and biology 41 (12), 1104-1119, 2004
Two circadian timing circuits in Neurospora crassa cells share components and regulate distinct rhythmic processes
RM de Paula, ZA Lewis, AV Greene, KS Seo, LW Morgan, MW Vitalini, ...
Journal of biological rhythms 21 (3), 159-168, 2006
Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation
S Honda, ZA Lewis, K Shimada, W Fischle, R Sack, EU Selker
Nature structural & molecular biology 19 (5), 471, 2012
DNA methylation: shared and divergent features across eukaryotes
RJ Schmitz, ZA Lewis, MG Goll
Trends in Genetics 35 (11), 818-827, 2019
High-density detection of restriction-site-associated DNA markers for rapid mapping of mutated loci in Neurospora
ZA Lewis, AL Shiver, N Stiffler, MR Miller, EA Johnson, EU Selker
Genetics 177 (2), 1163-1171, 2007
The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa
S Honda, ZA Lewis, M Huarte, LY Cho, LL David, Y Shi, EU Selker
Genes & development 24 (5), 443-454, 2010
Methylated DNA is over-represented in whole-genome bisulfite sequencing data
L Ji, T Sasaki, X Sun, P Ma, ZA Lewis, RJ Schmitz
Frontiers in genetics 5, 341, 2014
Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth
EY Basenko, T Sasaki, L Ji, CJ Prybol, RM Burckhardt, RJ Schmitz, ...
Proceedings of the National Academy of Sciences 112 (46), E6339-E6348, 2015
Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin
ZA Lewis, KK Adhvaryu, S Honda, AL Shiver, EU Selker
Proceedings of the National Academy of Sciences 107 (18), 8310-8315, 2010
KdmB, a Jumonji histone H3 demethylase, regulates genome-wide H3K4 trimethylation and is required for normal induction of secondary metabolism in Aspergillus nidulans
A Gacek-Matthews, H Berger, T Sasaki, K Wittstein, C Gruber, ZA Lewis, ...
PLoS genetics 12 (8), e1006222, 2016
The Neurospora circadian clock regulates a transcription factor that controls rhythmic expression of the output eas(ccg‐2) gene
D Bell‐Pedersen, ZA Lewis, JJ Loros, JC Dunlap
Molecular microbiology 41 (4), 897-909, 2001
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