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Rohit Shukla
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Molecular Dynamics Simulation of Protein and Protein–Ligand Complexes
R Shukla, T Tripathi
Computer-Aided Drug Design, 133-161, 2020
782020
Structure-based screening and molecular dynamics simulations offer novel natural compounds as potential inhibitors of Mycobacterium tuberculosis isocitrate lyase
R Shukla, H Shukla, A Sonkar, T Pandey, T Tripathi
Journal of Biomolecular Structure and Dynamics 36 (8), 2045-2057, 2018
712018
High-throughput rational design of the remdesivir binding site in the RdRp of SARS-CoV-2: implications for potential resistance
AK Padhi, R Shukla, P Saudagar, T Tripathi
Iscience 24 (1), 2021
652021
Distant Phe345 mutation compromises the stability and activity of Mycobacterium tuberculosis isocitrate lyase by modulating its structural flexibility
H Shukla, R Shukla, A Sonkar, T Pandey, T Tripathi
Scientific reports 7 (1), 1058, 2017
632017
Identification of new drug-like compounds from millets as Xanthine oxidoreductase inhibitors for treatment of Hyperuricemia: A molecular docking and simulation study
RK Pathak, A Gupta, R Shukla, M Baunthiyal
Computational biology and chemistry 76, 32-41, 2018
602018
Virtual Screening, Pharmacokinetics, Molecular dynamics and binding free energy analysis for small natural molecules against Cyclin-dependent kinase 5 for Alzheimer's disease.
R Shukla, TR Singh
Journal of biomolecular structure & dynamics, 1-22, 2019
562019
Identification of potential inhibitors of Fasciola gigantica thioredoxin1: computational screening, molecular dynamics simulation, and binding free energy studies
R Shukla, H Shukla, P Kalita, A Sonkar, T Pandey, DB Singh, A Kumar, ...
Journal of Biomolecular Structure and Dynamics 36 (8), 2147-2162, 2018
522018
Alterations in conformational topology and interaction dynamics caused by L418A mutation leads to activity loss of Mycobacterium tuberculosis isocitrate lyase
H Shukla, R Shukla, A Sonkar, T Tripathi
Biochemical and biophysical research communications 490 (2), 276-282, 2017
492017
In silico identification of mimicking molecules as defense inducers triggering jasmonic acid mediated immunity against alternaria blight disease in brassica species
RK Pathak, M Baunthiyal, R Shukla, D Pandey, G Taj, A Kumar
Frontiers in plant science 8, 609, 2017
492017
Exploring medicinal plant legacy for drug discovery in post-genomic era
S Singh, DB Singh, S Singh, R Shukla, PW Ramteke, K Misra
Proceedings of the National Academy of Sciences, India Section B: Biological …, 2019
482019
Structural insights into natural compounds as inhibitors of Fasciola gigantica thioredoxin glutathione reductase
R Shukla, H Shukla, P Kalita, T Tripathi
Journal of cellular biochemistry 119 (4), 3067-3080, 2018
452018
Molecular Dynamics Simulation in Drug Discovery: Opportunities and Challenges
R Shukla, T Tripathi
Innovations and Implementations of Computer Aided Drug Discovery Strategies …, 2021
442021
Identification of novel small molecules against GSK3β for Alzheimer's disease using chemoinformatics approach
R Shukla, NS Munjal, TR Singh
Journal of Molecular Graphics and Modelling, 2019
422019
Identification of novel natural inhibitors of Opisthorchis felineus cytochrome P450 using structure-based screening and molecular dynamic simulation
R Shukla, PB Chetri, A Sonkar, MY Pakharukova, VA Mordvinov, ...
Journal of Biomolecular Structure and Dynamics 36 (13), 3541-3556, 2018
372018
UDP-N-Acetylglucosamine enolpyruvyl transferase (MurA) of Acinetobacter baumannii (AbMurA): Structural and functional properties
A Sonkar, H Shukla, R Shukla, J Kalita, T Pandey, T Tripathi
International journal of biological macromolecules 97, 106-114, 2017
372017
A combined biochemical and computational studies of the rho-class glutathione s-transferase sll1545 of Synechocystis PCC 6803
T Pandey, R Shukla, H Shukla, A Sonkar, T Tripathi, AK Singh
International Journal of Biological Macromolecules 94, 378-385, 2017
362017
Activity loss by H46 mutation in Mycobacterium tuberculosis isocitrate lyase is due to decrease in structural plasticity and collective motions of the active site
R Shukla, H Shukla, T Tripathi
Tuberculosis, 2017
322017
Structural and energetic understanding of novel natural inhibitors of Mycobacterium tuberculosis malate synthase
R Shukla, H Shukla, T Tripathi
Journal of cellular biochemistry 120 (2), 2469-2482, 2019
312019
Draft Genome of the Liver Fluke Fasciola gigantica
T Pandey, A Ghosh, VN Todur, V Rajendran, P Kalita, J Kalita, R Shukla, ...
ACS omega 5 (19), 11084-11091, 2020
302020
Comprehensive analysis of the catalytic and structural properties of a mu-class glutathione s-transferase from Fasciola gigantica
J Kalita, R Shukla, H Shukla, K Gadhave, R Giri, T Tripathi
Scientific reports 7 (1), 17547, 2017
242017
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