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Aine Niamh O'Toole
Aine Niamh O'Toole
University of Edinburgh
Verified email at tcd.ie - Homepage
Title
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Cited by
Year
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
A Rambaut, EC Holmes, O’Toole, V Hill, JT McCrone, C Ruis, ...
Nature microbiology 5 (11), 1403-1407, 2020
17232020
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
7592021
Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
Nature 593 (7858), 266-269, 2021
6022021
Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
MedRxiv, 2020.12. 30.20249034, 2021
5452021
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity
EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ...
Cell 184 (5), 1171-1187. e20, 2021
3982021
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases 22 (1), 35-42, 2022
3232022
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
O’Toole, E Scher, A Underwood, B Jackson, V Hill, JT McCrone, ...
Virus evolution 7 (2), veab064, 2021
2882021
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands
BB Oude Munnink, DF Nieuwenhuijse, M Stein, O’Toole, M Haverkate, ...
Nature medicine 26 (9), 1405-1410, 2020
2472020
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Science 371 (6530), 708-712, 2021
2302021
Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study
MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ...
The Lancet Public Health 6 (5), e335-e345, 2021
2192021
COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study
RS Sikkema, SD Pas, DF Nieuwenhuijse, O'Toole, J Verweij, ...
The Lancet Infectious Diseases 20 (11), 1273-1280, 2020
2132020
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ...
Cell reports 35 (13), 109292, 2021
2072021
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
1742020
Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch
O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ...
Wellcome Open Research 6, 2021
1002021
The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity
EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ...
BioRxiv, 2020
992020
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic
B Jackson, MF Boni, MJ Bull, A Colleran, RM Colquhoun, AC Darby, ...
Cell 184 (20), 5179-5188. e8, 2021
822021
COVID-19 Genomics UK (COG-UK) consortium. Flaxman S, Ratmann O, Bhatt S, Hopkins S, Gandy A, Rambaut A, Ferguson NM. Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7…
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
Nature 593 (7858), 266-269, 2021
822021
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in Bioinformatics 22 (2), 642-663, 2021
812021
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2
P Lemey, SL Hong, V Hill, G Baele, C Poletto, V Colizza, O’toole, ...
Nature communications 11 (1), 1-14, 2020
742020
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland
A da Silva Filipe, JG Shepherd, T Williams, J Hughes, E Aranday-Cortes, ...
Nature Microbiology 6 (1), 112-122, 2021
642021
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