|Real-time, portable genome sequencing for Ebola surveillance|
J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ...
Nature 530 (7589), 228-232, 2016
|Nanopore sequencing and assembly of a human genome with ultra-long reads|
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338, 2018
|A complete bacterial genome assembled de novo using only nanopore sequencing data|
NJ Loman, J Quick, JT Simpson
Nature methods 12 (8), 733-735, 2015
|Binning metagenomic contigs by coverage and composition|
J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
Nature methods 11 (11), 1144-1146, 2014
|Establishment and cryptic transmission of Zika virus in Brazil and the Americas|
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406-410, 2017
|A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104: H4|
NJ Loman, C Constantinidou, M Christner, H Rohde, JZM Chan, J Quick, ...
Jama 309 (14), 1502-1510, 2013
|Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella|
J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ...
Genome biology 16 (1), 114, 2015
|A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer|
J Quick, AR Quinlan, NJ Loman
Gigascience 3 (1), 2047-217X-3-22, 2014
|Genomic epidemiology reveals multiple introductions of Zika virus into the United States|
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature 546 (7658), 401-405, 2017
|Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples|
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
nature protocols 12 (6), 1261, 2017
|Virus genomes reveal factors that spread and sustained the Ebola epidemic|
G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ...
Nature 544 (7650), 309-315, 2017
|Extensive modulation of the fecal metagenome in children with Crohn's disease during exclusive enteral nutrition|
C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ...
The American journal of gastroenterology 110 (12), 1718, 2015
|Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe|
GL Kay, MJ Sergeant, Z Zhou, JZM Chan, A Millard, J Quick, I Szikossy, ...
Nature communications 6 (1), 1-9, 2015
|Genomic and epidemiological monitoring of yellow fever virus transmission potential|
NR Faria, MUG Kraemer, SC Hill, JG De Jesus, RS Aguiar, FCM Iani, ...
Science 361 (6405), 894-899, 2018
|Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing|
J Quick, N Cumley, CM Wearn, M Niebel, C Constantinidou, CM Thomas, ...
BMJ open 4 (11), e006278, 2014
|Nanopore native RNA sequencing of a human poly (A) transcriptome|
RE Workman, A Tang, PS Tang, M Jain, JR Tyson, PC Zuzarte, ...
BioRxiv, 459529, 2018
|Ultra-deep, long-read nanopore sequencing of mock microbial community standards|
SM Nicholls, JC Quick, S Tang, NJ Loman
Gigascience 8 (5), giz043, 2019
|De novo identification of DNA modifications enabled by genome-guided nanopore signal processing|
MH Stoiber, J Quick, R Egan, JE Lee, SE Celniker, R Neely, N Loman, ...
BioRxiv, 094672, 2016
|CONCOCT: clustering contigs on coverage and composition|
J Alneberg, BS Bjarnason, I de Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
arXiv preprint arXiv:1312.4038, 2013
|An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar|
ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ...
Genome biology 20 (1), 1-19, 2019