Joshua Quick
Joshua Quick
Bioinformatician, University of Birmingham
Verified email at bham.ac.uk
TitleCited byYear
Real-time, portable genome sequencing for Ebola surveillance
J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ...
Nature 530 (7589), 228-232, 2016
6502016
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338, 2018
5872018
A complete bacterial genome assembled de novo using only nanopore sequencing data
NJ Loman, J Quick, JT Simpson
Nature methods 12 (8), 733-735, 2015
5442015
Binning metagenomic contigs by coverage and composition
J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
Nature methods 11 (11), 1144-1146, 2014
5132014
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406-410, 2017
2832017
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104: H4
NJ Loman, C Constantinidou, M Christner, H Rohde, JZM Chan, J Quick, ...
Jama 309 (14), 1502-1510, 2013
2402013
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ...
Genome biology 16 (1), 114, 2015
1962015
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
J Quick, AR Quinlan, NJ Loman
Gigascience 3 (1), 2047-217X-3-22, 2014
1832014
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature 546 (7658), 401-405, 2017
1812017
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
nature protocols 12 (6), 1261, 2017
1812017
Virus genomes reveal factors that spread and sustained the Ebola epidemic
G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ...
Nature 544 (7650), 309-315, 2017
1732017
Extensive modulation of the fecal metagenome in children with Crohn's disease during exclusive enteral nutrition
C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ...
The American journal of gastroenterology 110 (12), 1718, 2015
1202015
Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe
GL Kay, MJ Sergeant, Z Zhou, JZM Chan, A Millard, J Quick, I Szikossy, ...
Nature communications 6 (1), 1-9, 2015
1032015
Genomic and epidemiological monitoring of yellow fever virus transmission potential
NR Faria, MUG Kraemer, SC Hill, JG De Jesus, RS Aguiar, FCM Iani, ...
Science 361 (6405), 894-899, 2018
832018
Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing
J Quick, N Cumley, CM Wearn, M Niebel, C Constantinidou, CM Thomas, ...
BMJ open 4 (11), e006278, 2014
822014
Nanopore native RNA sequencing of a human poly (A) transcriptome
RE Workman, A Tang, PS Tang, M Jain, JR Tyson, PC Zuzarte, ...
BioRxiv, 459529, 2018
352018
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
SM Nicholls, JC Quick, S Tang, NJ Loman
Gigascience 8 (5), giz043, 2019
292019
De novo identification of DNA modifications enabled by genome-guided nanopore signal processing
MH Stoiber, J Quick, R Egan, JE Lee, SE Celniker, R Neely, N Loman, ...
BioRxiv, 094672, 2016
292016
CONCOCT: clustering contigs on coverage and composition
J Alneberg, BS Bjarnason, I de Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
arXiv preprint arXiv:1312.4038, 2013
272013
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ...
Genome biology 20 (1), 1-19, 2019
212019
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Articles 1–20