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Emma Dann
Emma Dann
Wellcome Sanger Institute
Verified email at sanger.ac.uk
Title
Cited by
Cited by
Year
Single-cell multi-omics analysis of the immune response in COVID-19
E Stephenson, G Reynolds, RA Botting, FJ Calero-Nieto, MD Morgan, ...
Nature medicine 27 (5), 904-916, 2021
4902021
Cell2location maps fine-grained cell types in spatial transcriptomics
V Kleshchevnikov, A Shmatko, E Dann, A Aivazidis, HW King, T Li, ...
Nature biotechnology 40 (5), 661-671, 2022
3632022
Cells of the human intestinal tract mapped across space and time
R Elmentaite, N Kumasaka, HW King, K Roberts, M Dabrowska, ...
bioRxiv, 2021
2902021
Differential abundance testing on single-cell data using k-nearest neighbor graphs
E Dann, NC Henderson, SA Teichmann, MD Morgan, JC Marioni
Nature biotechnology 40 (2), 245-253, 2022
2882022
Best practices for single-cell analysis across modalities
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...
Nature Reviews Genetics 24 (8), 550-572, 2023
2062023
Mapping the developing human immune system across organs
C Suo, E Dann, I Goh, L Jardine, V Kleshchevnikov, JE Park, RA Botting, ...
Science 376 (6597), eabo0510, 2022
1542022
Circulating tumor DNA profile recognizes transformation to castration-resistant neuroendocrine prostate cancer
H Beltran, A Romanel, V Conteduca, N Casiraghi, M Sigouros, ...
The Journal of clinical investigation 130 (4), 1653-1668, 2020
1522020
Blood and immune development in human fetal bone marrow and Down syndrome
L Jardine, S Webb, I Goh, M Quiroga Londoņo, G Reynolds, M Mather, ...
Nature 598 (7880), 327-331, 2021
772021
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
P He, K Lim, D Sun, JP Pett, Q Jeng, K Polanski, Z Dong, L Bolt, ...
Cell 185 (25), 4841-4860. e25, 2022
722022
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics
V Kleshchevnikov, A Shmatko, E Dann, A Aivazidis, HW King, T Li, ...
BioRxiv, 2020.11. 15.378125, 2020
722020
Cambridge Institute of therapeutic immunology and infectious disease-national Institute of health research (CITIID-NIHR) COVID-19 BioResource collaboration, single-cell multi …
E Stephenson, G Reynolds, RA Botting, FJ Calero-Nieto, MD Morgan, ...
Nat. Med 27 (5), 904-916, 2021
402021
The cellular immune response to COVID-19 deciphered by single cell multi-omics across three UK centres
E Stephenson, G Reynolds, RA Botting, FJ Calero-Nieto, M Morgan, ...
medRxiv, 2021
232021
Dandelion uses the single-cell adaptive immune receptor repertoire to explore lymphocyte developmental origins
C Suo, K Polanski, E Dann, RGH Lindeboom, R Vilarrasa-Blasi, ...
Nature Biotechnology 42 (1), 40-51, 2024
202024
Yolk sac cell atlas reveals multiorgan functions during human early development
I Goh, RA Botting, A Rose, S Webb, J Engelbert, Y Gitton, E Stephenson, ...
Science 381 (6659), eadd7564, 2023
192023
Precise identification of cell states altered in disease using healthy single-cell references
E Dann, AM Cujba, AJ Oliver, KB Meyer, SA Teichmann, JC Marioni
Nature Genetics 55 (11), 1998-2008, 2023
10*2023
Sensitive cluster-free differential expression testing
A Missarova, E Dann, L Rosen, R Satija, J Marioni
bioRxiv, 2023
92023
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics. bioRxiv: 2020.11. 15.378125
V Kleshchevnikov, A Shmatko, E Dann, A Aivazidis, HW King, T Li, ...
72020
Early human lung immune cell development and its role in epithelial cell fate
JL Barnes, M Yoshida, P He, KB Worlock, RGH Lindeboom, C Suo, ...
Science Immunology 8 (90), eadf9988, 2023
62023
Modelling technical and biological effects in scRNA-seq data with scalable GPLVMs
V Lalchand, A Ravuri, E Dann, N Kumasaka, D Sumanaweera, ...
arXiv preprint arXiv:2209.06716, 2022
52022
Dandelion utilizes single cell adaptive immune receptor repertoire to explore lymphocyte developmental origins
C Suo, K Polanski, E Dann, RGH Lindeboom, R Vilarrasa-Blasi, ...
bioRxiv, 2022.11. 18.517068, 2022
22022
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