Séamus Holden

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Achillefs KapanidisProfessor in Biological Physics, University of OxfordVerified email at physics.ox.ac.uk
Suliana ManleyProfessor of Physics, EPFLVerified email at epfl.ch
Ricardo HenriquesGroup Leader at Instituto Gulbenkian de Ciência and Honorary Professor at UCL (LMCB)Verified email at igc.gulbenkian.pt
Mike HeilemannProfessor of Physical Chemistry, Goethe-University Frankfurt/M., GermanyVerified email at chemie.uni-frankfurt.de
Cees DekkerKavli Institute of Nanoscience, Delft University of Technology, The NetherlandsVerified email at tudelft.nl
Thomas PengoDirector of Research Informatics, U of MinnesotaVerified email at umn.edu
Michael UnserProfessor, Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), SwitzerlandVerified email at epfl.ch
Christoph SpahnPhD, MPI for terrestrial microbiologyVerified email at mpi-marburg.mpg.de
Johannes HohlbeinAssociate Professor, Wageningen University & ResearchVerified email at wur.nl
Stephan UphoffUniversity of OxfordVerified email at bioch.ox.ac.uk
Yves V. BrunProfessor and Canada 150 Research Chair at the Université de MontréalVerified email at umontreal.ca
Yingjie SunHarvard UniversityVerified email at g.harvard.edu
YEN-PANG HSUMerckVerified email at merck.com
Michael VanNieuwenhzeStandiford H. Cox Professor of Chemistry, Indiana UniversityVerified email at indiana.edu
Lina CarliniThe Rockefeller UniversityVerified email at mail.rockefeller.edu
Joseph Peter TorellaGraduate Student in Systems Biology, Harvard Medical SchoolVerified email at fas.harvard.edu
Jong Chul YeProfessor and Endowed Chair, KAISTVerified email at kaist.ac.kr
Florian JugFondatione Human TechnopoleVerified email at fht.org
Alexander KrullMPI-CBG/PKS in DresdenVerified email at tu-dresden.de
Tim-Oliver BuchholzFriedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch

Séamus Holden

Associate Professor, University of Warwick, UK

Verified email at warwick.ac.uk - Homepage

Biophysics Bacteriology Microscopy


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Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division AW Bisson-Filho, YP Hsu, GR Squyres, E Kuru, F Wu, C Jukes, Y Sun, ... Science 355 (6326), 739-743, 2017	555	2017
DAOSTORM: an algorithm for high-density super-resolution microscopy SJ Holden, S Uphoff, AN Kapanidis Nature Methods 8 (4), 279-280, 2011	485	2011
Democratising deep learning for microscopy with ZeroCostDL4Mic L von Chamier, RF Laine, J Jukkala, C Spahn, D Krentzel, E Nehme, ... Nature communications 12 (1), 2276, 2021	344*	2021
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software D Sage, TA Pham, H Babcock, T Lukes, T Pengo, J Chao, R Velmurugan, ... Nature methods 16 (5), 387-395, 2019	287	2019
High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization SJ Holden, T Pengo, KL Meibom, C Fernandez Fernandez, J Collier, ... Proceedings of the National Academy of Sciences 111 (12), 4566-4571, 2014	231	2014
Defining the Limits of Single-Molecule FRET Resolution in TIRF Microscopy SJ Holden, S Uphoff, J Hohlbein, D Yadin, L Le Reste, OJ Britton, ... Biophysical Journal 99 (9), 3102-3111, 2010	212	2010
FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data J Min, C Vonesch, H Kirshner, L Carlini, N Olivier, S Holden, S Manley, ... Scientific reports 4 (1), 4577, 2014	183	2014
Multiscale Spatial Organization of RNA Polymerase in Escherichia coli U Endesfelder, K Finan, SJ Holden, PR Cook, AN Kapanidis, ... Biophysical Journal 105 (1), 172-181, 2013	173	2013
Monitoring multiple distances within a single molecule using switchable FRET S Uphoff, SJ Holden, L Le Reste, J Periz, S van de Linde, M Heilemann, ... Nature Methods 7 (10), 831-836, 2010	123	2010
Identifying molecular dynamics in single-molecule FRET experiments with burst variance analysis JP Torella, SJ Holden, Y Santoso, J Hohlbein, AN Kapanidis Biophysical journal 100 (6), 1568-1577, 2011	121	2011
Movement dynamics of divisome proteins and PBP2x:FtsW in cells of Streptococcus pneumoniae AJ Perez, Y Cesbron, SL Shaw, J Bazan Villicana, HCT Tsui, MJ Boersma, ... Proceedings of the National Academy of Sciences 116 (8), 3211-3220, 2019	101	2019
FtsZ treadmilling is essential for Z-ring condensation and septal constriction initiation in Bacillus subtilis cell division KD Whitley, C Jukes, N Tregidgo, E Karinou, P Almada, Y Cesbron, ... Nature communications 12 (1), 2448, 2021	52	2021
PALMsiever: a tool to turn raw data into results for single-molecule localization microscopy T Pengo, SJ Holden, S Manley Bioinformatics 31 (5), 797-798, 2015	46	2015
3D high-density localization microscopy using hybrid astigmatic/biplane imaging and sparse image reconstruction J Min, SJ Holden, L Carlini, M Unser, S Manley, JC Ye Biomedical optics express 5 (11), 3935-3948, 2014	46	2014
Modularity and determinants of a (bi-) polarization control system from free-living and obligate intracellular bacteria M Berge, S Campagne, J Mignolet, S Holden, L Theraulaz, S Manley, ... Elife 5, e20640, 2016	35	2016
Single‐Molecule DNA Biosensors for Protein and Ligand Detection K Lymperopoulos, R Crawford, JP Torella, M Heilemann, LC Hwang, ... Angewandte Chemie International Edition 49 (7), 1316-1320, 2010	33	2010
Probing the mechanistic principles of bacterial cell division with super-resolution microscopy S Holden Current opinion in microbiology 43, 84-91, 2018	31	2018
Correction of a depth-dependent lateral distortion in 3D super-resolution imaging L Carlini, SJ Holden, KM Douglass, S Manley PLoS One 10 (11), e0142949, 2015	28	2015
DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches C Spahn, E Gómez-de-Mariscal, RF Laine, PM Pereira, L von Chamier, ... Communications Biology 5 (1), 688, 2022	27*	2022
Geometric principles underlying the proliferation of a model cell system LJ Wu, S Lee, S Park, LE Eland, A Wipat, S Holden, J Errington Nature communications 11 (1), 4149, 2020	27	2020

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