Ryan K Waples
Ryan K Waples
Postdoc, University of Washington
Verified email at bio.ku.dk
Title
Cited by
Cited by
Year
Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)
WA Larson, LW Seeb, MV Everett, RK Waples, WD Templin, JE Seeb
Evolutionary Applications 7 (3), 355-369, 2014
1932014
Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci
RK Waples, WA Larson, RS Waples
Heredity 117 (4), 233-240, 2016
1132016
Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping‐by‐sequencing data from natural populations
GJ McKinney, RK Waples, LW Seeb, JE Seeb
Molecular Ecology Resources 17 (4), 656-669, 2017
1102017
A resurrection study reveals rapid adaptive evolution within populations of an invasive plant
SE Sultan, T Horgan‐Kobelski, LM Nichols, CE Riggs, RK Waples
Evolutionary Applications 6 (2), 266-278, 2013
1032013
Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)
RK Waples, LW Seeb, JE Seeb
Molecular Ecology Resources 16 (1), 17-28, 2016
562016
Effective number of breeders from sibship reconstruction: empirical evaluations using hatchery steelhead
MW Ackerman, BK Hand, RK Waples, G Luikart, RS Waples, CA Steele, ...
Evolutionary applications 10 (2), 146-160, 2017
542017
An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha)
GJ McKinney, LW Seeb, WA Larson, D Gomez‐Uchida, MT Limborg, ...
Molecular ecology resources 16 (3), 769-783, 2016
492016
Inbreeding effective population size and parentage analysis without parents
RS Waples, RK Waples
Molecular Ecology Resources 11, 162-171, 2011
442011
More grist for the mill? Species delimitation in the genomic era and its implications for conservation
DWG Stanton, P Frandsen, RK Waples, R Heller, IRM Russo, ...
Conservation Genetics 20 (1), 101-113, 2019
372019
Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation
MT Limborg, RK Waples, JE Seeb, LW Seeb
Journal of Heredity 105 (6), 835-845, 2014
302014
Parallel signatures of selection in temporally isolated lineages of pink salmon
LW Seeb, RK Waples, MT Limborg, KI Warheit, CE Pascal, JE Seeb
Molecular ecology 23 (10), 2473-2485, 2014
272014
Allele frequency‐free inference of close familial relationships from genotypes or low‐depth sequencing data
RK Waples, A Albrechtsen, I Moltke
Molecular ecology 28 (1), 35-48, 2019
252019
Resolving allele dosage in duplicated loci using genotyping‐by‐sequencing data: A path forward for population genetic analysis
GJ McKinney, RK Waples, CE Pascal, LW Seeb, JE Seeb
Molecular ecology resources 18 (3), 570-579, 2018
232018
Linkage mapping reveals strong chiasma interference in sockeye salmon: implications for interpreting genomic data
MT Limborg, RK Waples, FW Allendorf, JE Seeb
G3: Genes, Genomes, Genetics 5 (11), 2463-2473, 2015
232015
The application of genomics to inform conservation of a functionally important reef fish (Scarus niger) in the Philippines
BL Stockwell, WA Larson, RK Waples, RA Abesamis, LW Seeb, ...
Conservation Genetics 17 (1), 239-249, 2016
212016
Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits
A Gilly, D Suveges, K Kuchenbaecker, M Pollard, L Southam, ...
Nature communications 9 (1), 1-9, 2018
202018
Congruent population structure across paralogous and nonparalogous loci in Salish Sea chum salmon (Oncorhynchus keta)
RK Waples, JE Seeb, LW Seeb
Molecular ecology 26 (16), 4131-4144, 2017
112017
Pseudoreplication in genomics-scale datasets
RS Waples, R Waples, EJ Ward
bioRxiv, 2020.11. 12.380410, 2021
52021
High genetic diversity and low differentiation reflect the ecological versatility of the African leopard
P Pečnerová, G Garcia-Erill, X Liu, C Nursyifa, RK Waples, CG Santander, ...
Current Biology 31 (9), 1862-1871. e5, 2021
22021
Comparison of even-and odd-year broodlines of pink salmon using genotyping by sequencing
LW Seeb, RK Waples, JE Seeb
North Pacific Anadromous Fish Commission Technical Report 8, 66, 2012
22012
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Articles 1–20