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Sandeep Venkataram
Sandeep Venkataram
Computational Biologist, Hexagon Bio
Verified email at hexagonbio.com - Homepage
Title
Cited by
Cited by
Year
Quantitative evolutionary dynamics using high-resolution lineage tracking
SF Levy, JR Blundell, S Venkataram, DA Petrov, DS Fisher, G Sherlock
Nature 519 (7542), 181-186, 2015
4362015
Development of a comprehensive genotype-to-fitness map of adaptation-driving mutations in yeast
S Venkataram, B Dunn, Y Li, A Agarwala, J Chang, ER Ebel, ...
Cell 166 (6), 1585-1596. e22, 2016
2092016
Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution
W Leung, CD Shaffer, LK Reed, ST Smith, W Barshop, W Dirkes, ...
G3: Genes, Genomes, Genetics 5 (5), 719-740, 2015
1062015
Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila
GE Rech, M Bogaerts-Marquez, MG Barrón, M Merenciano, ...
PLoS Genetics 15 (2), e1007900, 2019
712019
Hidden complexity of yeast adaptation under simple evolutionary conditions
Y Li, S Venkataram, A Agarwala, B Dunn, DA Petrov, G Sherlock, ...
Current Biology 28 (4), 515-525. e6, 2018
592018
High-resolution mapping of cis-regulatory variation in budding yeast
R Kita, S Venkataram, Y Zhou, HB Fraser
Proceedings of the National Academy of Sciences 114 (50), E10736-E10744, 2017
452017
Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence?
S Venkataram, JC Fay
Genome biology and evolution 2, 851-858, 2010
342010
Evolutionary stalling and a limit on the power of natural selection to improve a cellular module
S Venkataram, R Monasky, SH Sikaroodi, S Kryazhimskiy, B Kacar
Proceedings of the National Academy of Sciences 117 (31), 18582-18590, 2020
332020
High rate of adaptation of mammalian proteins that interact with Plasmodium and related parasites
ER Ebel, N Telis, S Venkataram, DA Petrov, D Enard
PLoS genetics 13 (9), e1007023, 2017
282017
Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community
S Venkataram, HY Kuo, EFY Hom, S Kryazhimskiy
Nature Ecology & Evolution 7 (1), 143-154, 2023
202023
Best practices in designing, sequencing, and identifying random DNA barcodes
MS Johnson, S Venkataram, S Kryazhimskiy
Journal of molecular evolution 91 (3), 263-280, 2023
192023
Mutualism-enhancing mutations dominate early adaptation in a microbial community
S Venkataram, HY Kuo, EFY Hom, S Kryazhimskiy
biorxiv, 2021.07. 07.451547, 2021
8*2021
Polymorphism and the Predictability of Evolution in Fisher’s Geometric Model
S Venkataram, D Sellis, DA Petrov
bioRxiv, 001016, 2013
4*2013
Evolutionary repeatability of emergent properties of ecological communities
S Venkataram, S Kryazhimskiy
Philosophical Transactions of the Royal Society B 378 (1877), 20220047, 2023
32023
Transposable elements drive recent adaptation in Drosophila melanogaster
A Ullastres, MG Barrón, AS Fiston-Lavier, S Venkataram, DA Petrov, ...
2016
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