| Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane AL Vettore, FR da Silva, EL Kemper, GM Souza, AM da Silva, MIT Ferro, ... Genome research 13 (12), 2725-2735, 2003 | 387 | 2003 |
| Footprints of inversions at present and past pseudoautosomal boundaries in human sex chromosomes C Lemaitre, MDV Braga, C Gautier, MF Sagot, E Tannier, GAB Marais Genome biology and evolution 1, 56-66, 2009 | 102 | 2009 |
| Double cut and join with insertions and deletions MDV Braga, E Willing, J Stoye Journal of Computational Biology 18 (9), 1167-1184, 2011 | 95 | 2011 |
| Whole-Genome Analysis of Transporters in the Plant Pathogen Xylella fastidiosa J Meidanis, MDV Braga, S Verjovski-Almeida Microbiology and Molecular Biology Reviews 66 (2), 272-299, 2002 | 62 | 2002 |
| Bioinformatics of the sugarcane EST project GP Telles, MDV Braga, Z Dias, L Tzy-Li, JAA Quitzau, FR Silva, ... Genetics and Molecular Biology 24, 9-15, 2001 | 62 | 2001 |
| The solution space of sorting by DCJ MDV Braga, J Stoye Journal of Computational Biology 17 (9), 1145-1165, 2010 | 58 | 2010 |
| Exploring the solution space of sorting by reversals, with experiments and an application to evolution MDV Braga, MF Sagot, C Scornavacca, E Tannier IEEE/ACM transactions on computational biology and bioinformatics 5 (3), 348-356, 2008 | 56 | 2008 |
| Repetition-free longest common subsequence SS Adi, MDV Braga, CG Fernandes, CE Ferreira, FV Martinez, MF Sagot, ... Discrete Applied Mathematics 158 (12), 1315-1324, 2010 | 44 | 2010 |
| Genomic distance with DCJ and indels MDV Braga, E Willing, J Stoye Algorithms in Bioinformatics: 10th International Workshop, WABI 2010 …, 2010 | 44 | 2010 |
| Computing the rearrangement distance of natural genomes L Bohnenkämper, MDV Braga, D Doerr, J Stoye Journal of Computational Biology 28 (4), 410-431, 2021 | 37 | 2021 |
| The solution space of sorting by reversals MDV Braga, MF Sagot, C Scornavacca, E Tannier International Symposium on Bioinformatics Research and Applications, 293-304, 2007 | 31 | 2007 |
| baobabLUNA : the solution space of sorting by reversals MDV Braga Bioinformatics 25 (14), 1833-1835, 2009 | 29 | 2009 |
| On the family-free DCJ distance and similarity FV Martinez, P Feijão, MDV Braga, J Stoye Algorithms for Molecular Biology 10, 1-10, 2015 | 27 | 2015 |
| The potential of family-free genome comparison MDV Braga, C Chauve, D Doerr, K Jahn, J Stoye, A Thévenin, R Wittler Models and Algorithms for Genome Evolution, 287-307, 2013 | 22 | 2013 |
| Restricted DCJ model: rearrangement problems with chromosome reincorporation J Kováč, R Warren, MDV Braga, J Stoye Journal of Computational Biology 18 (9), 1231-1241, 2011 | 22 | 2011 |
| On the inversion-indel distance E Willing, S Zaccaria, MDV Braga, J Stoye BMC bioinformatics 14, 1-10, 2013 | 21 | 2013 |
| On the weight of indels in genomic distances MDV Braga, R Machado, LC Ribeiro, J Stoye BMC bioinformatics 12, 1-9, 2011 | 18 | 2011 |
| DCJ-indel and DCJ-substitution distances with distinct operation costs PH da Silva, R Machado, S Dantas, MDV Braga Algorithms for Molecular Biology 8, 1-15, 2013 | 16 | 2013 |
| Approximating the DCJ distance of balanced genomes in linear time DP Rubert, P Feijão, MDV Braga, J Stoye, FHV Martinez Algorithms for Molecular Biology 12, 1-13, 2017 | 15 | 2017 |
| Counting all DCJ sorting scenarios MDV Braga, J Stoye RECOMB International Workshop on Comparative Genomics, 36-47, 2009 | 15 | 2009 |
