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Xingqi Chen
Xingqi Chen
Associate Professor/Senior Lecturer, Department of IGP, Uppsala University
Verified email at igp.uu.se - Homepage
Title
Cited by
Cited by
Year
Circular ecDNA promotes accessible chromatin and high oncogene expression
S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ...
Nature 575 (7784), 699-703, 2019
3792019
Sensing self and foreign circular RNAs by intron identity
YG Chen, MV Kim, X Chen, PJ Batista, S Aoyama, JE Wilusz, A Iwasaki, ...
Molecular cell 67 (2), 228-238. e5, 2017
3752017
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing
X Chen, Y Shen, W Draper, JD Buenrostro, U Litzenburger, SW Cho, ...
Nature methods 13 (12), 1013-1020, 2016
2222016
Activation of PDGF pathway links LMNA mutation to dilated cardiomyopathy
J Lee, V Termglinchan, S Diecke, I Itzhaki, CK Lam, P Garg, E Lau, ...
Nature 572 (7769), 335-340, 2019
1572019
PARP1-and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription
H Zhao, EG Sifakis, N Sumida, L Millán-Arińo, BA Scholz, JP Svensson, ...
Molecular cell 59 (6), 984-997, 2015
1502015
Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity
X Chen, UM Litzenburger, Y Wei, AN Schep, EL LaGory, H Choudhry, ...
Nature communications 9 (1), 1-12, 2018
832018
3D ATAC-PALM: super-resolution imaging of the accessible genome
L Xie, P Dong, X Chen, THS Hsieh, S Banala, M De Marzio, BP English, ...
Nature methods 17 (4), 430-436, 2020
622020
Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility
M Meijer, E Agirre, M Kabbe, CA van Tuijn, A Heskol, C Zheng, AM Falcao, ...
Neuron 110 (7), 1193-1210. e13, 2022
372022
Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma
XK Zhao, P Xing, X Song, M Zhao, L Zhao, Y Dang, LL Lei, RH Xu, ...
Nature communications 12 (1), 1-14, 2021
312021
BRD2 compartmentalizes the accessible genome
L Xie, P Dong, Y Qi, THS Hsieh, BP English, SK Jung, X Chen, ...
Nature genetics 54 (4), 481-491, 2022
272022
The visualization of large organized chromatin domains enriched in the H3K9me2 mark within a single chromosome in a single cell
X Chen, S Yammine, C Shi, M Tark-Dame, A Göndör, R Ohlsson
Epigenetics 9 (11), 1439-1445, 2014
272014
Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network
Z Zhu, X Wu, Q Li, J Zhang, S Yu, Q Shen, Z Zhou, Q Pan, W Yue, D Qin, ...
The FASEB Journal 35 (6), e21664, 2021
252021
Chromatin in situ proximity (ChrISP): Single-cell analysis of chromatin proximities at a high resolution
X Chen, C Shi, S Yammine, A Göndör, D Rönnlund, ...
Biotechniques 56 (3), 117-124, 2014
212014
Phytohemagglutinin improves efficiency of electrofusing mammary gland epithelial cells into oocytes in goats
YL Zhang, FJ Liu, DQ Sun, XQ Chen, Y Zhang, YM Zheng, MT Zhao, ...
Theriogenology 69 (9), 1165-1171, 2008
212008
Super enhancers—Functional cores under the 3D genome
J Zhang, W Yue, Y Zhou, M Liao, X Chen, J Hua
Cell proliferation 54 (2), e12970, 2021
172021
Super-enhancers conserved within placental mammals maintain stem cell pluripotency
J Zhang, Y Zhou, W Yue, Z Zhu, X Wu, S Yu, Q Shen, Q Pan, W Xu, ...
Proceedings of the National Academy of Sciences 119 (40), e2204716119, 2022
142022
Single-cell analysis reveals major histocompatibility complex II‒expressing keratinocytes in pressure ulcers with worse healing outcomes
D Li, S Cheng, YU Pei, P Sommar, J Kärner, EK Herter, MA Toma, ...
Journal of Investigative Dermatology 142 (3), 705-716, 2022
142022
FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers
L Zhao, P Xing, VK Polavarapu, M Zhao, B Valero-Martínez, Y Dang, ...
Nucleic Acids Research 49 (21), e125-e125, 2021
142021
The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver
M Cavalli, K Diamanti, Y Dang, P Xing, G Pan, X Chen, C Wadelius
OMICS: A Journal of Integrative Biology 25 (10), 652-659, 2021
112021
Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples
VK Polavarapu, P Xing, Z Hua, Z Miao, L Mathot, L Zhao, G Rosen, ...
Genome Research, gr. 275269.121, 2021
11*2021
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