Jasper J. Koehorst
TitleCited byYear
Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus
RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ...
Molecular cell 52 (1), 135-145, 2013
1792013
RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ...
Molecular cell 56 (4), 518-530, 2014
1732014
Reverse methanogenesis and respiration in methanotrophic archaea
PHA Timmers, CU Welte, JJ Koehorst, CM Plugge, MSM Jetten, ...
Archaea 2017, 2017
962017
Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
SH Kazakoff, M Imelfort, D Edwards, J Koehorst, B Biswas, J Batley, ...
PLoS One 7 (12), e51687, 2012
562012
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
P Worm, JJ Koehorst, M Visser, VT Sedano-Núñez, PJ Schaap, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1837 (12), 2004-2016, 2014
542014
Differential translation tunes uneven production of operon-encoded proteins
TEF Quax, YI Wolf, JJ Koehorst, O Wurtzel, R van der Oost, W Ran, ...
Cell reports 4 (5), 938-944, 2013
512013
Effects of Argonaute on gene expression in Thermus thermophilus
DC Swarts, JJ Koehorst, ER Westra, PJ Schaap, J van der Oost
PloS one 10 (4), e0124880, 2015
232015
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
JJ Koehorst, JCJ Van Dam, RGA Van Heck, E Saccenti, ...
Scientific reports 6, 38699, 2016
22*2016
Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice
A Fiebig, TG Loof, A Babbar, A Itzek, JJ Koehorst, PJ Schaap, ...
International Journal of Medical Microbiology 305 (6), 532-543, 2015
222015
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
JJ Koehorst, E Saccenti, PJ Schaap, VAPM dos Santos, M Suarez-Diez
F1000Research 5, 2016
152016
Genome and proteome analysis of Pseudomonas chloritidismutans AW‐1T that grows on n‐decane with chlorate or oxygen as electron acceptor
F Mehboob, MJ Oosterkamp, JJ Koehorst, S Farrakh, T Veuskens, ...
Environmental microbiology 18 (10), 3247-3257, 2016
112016
Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
BioRxiv, 350991, 2018
102018
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
JJ Koehorst, JCJ van Dam, E Saccenti, VAP Martins dos Santos, ...
Bioinformatics 34 (8), 1401-1403, 2017
102017
Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216 T
EF Bosma, JJ Koehorst, SAFT van Hijum, B Renckens, B Vriesendorp, ...
Standards in genomic sciences 11 (1), 52, 2016
102016
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource
JCJ van Dam, JJ Koehorst, PJ Schaap, VAM Dos Santos, M Suarez-Diez
Journal of biomedical semantics 6 (1), 39, 2015
102015
Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum …
M Visser, SN Parshina, JI Alves, DZ Sousa, IAC Pereira, G Muyzer, ...
Standards in genomic sciences 9 (3), 655, 2014
102014
Persistence of functional protein domains in mycoplasma species and their role in host specificity and synthetic minimal life
T Kamminga, JJ Koehorst, P Vermeij, SJ Slagman, ...
Frontiers in cellular and infection microbiology 7, 31, 2017
82017
Comparative Genomics Highlights Symbiotic Capacities and High Metabolic Flexibility of the Marine Genus Pseudovibrio
D Versluis, B Nijsse, MA Naim, JJ Koehorst, J Wiese, JF Imhoff, ...
Genome biology and evolution 10 (1), 125-142, 2018
62018
Complete genome sequence of Akkermansia glycaniphila strain PytT, a mucin-degrading specialist of the reticulated python gut
JP Ouwerkerk, JJ Koehorst, PJ Schaap, J Ritari, L Paulin, C Belzer, ...
Genome Announc. 5 (1), e01098-16, 2017
62017
Concurrent haloalkanoate degradation and chlorate reduction by Pseudomonas chloritidismutans AW-1T
P Peng, Y Zheng, JJ Koehorst, PJ Schaap, AJM Stams, H Smidt, ...
Appl. Environ. Microbiol. 83 (12), e00325-17, 2017
52017
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Articles 1–20