Jody Phelan
Jody Phelan
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Cited by
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis
F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ...
Nature genetics 50 (2), 307-316, 2018
Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs
JE Phelan, DM O’sullivan, D Machado, J Ramos, YEA Oppong, ...
Genome medicine 11, 1-7, 2019
Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable …
K Dheda, JD Limberis, E Pietersen, J Phelan, A Esmail, M Lesosky, ...
The lancet Respiratory medicine 5 (4), 269-281, 2017
Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis
N Andreu, J Phelan, PF de Sessions, JM Cliff, TG Clark, ML Hibberd
Scientific reports 7 (1), 42225, 2017
Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance
J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ...
BMC medicine 14, 1-13, 2016
Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies
G Napier, S Campino, Y Merid, M Abebe, Y Woldeamanuel, A Aseffa, ...
Genome medicine 12, 1-10, 2020
Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study
RM Doyle, DM O'sullivan, SD Aller, S Bruchmann, T Clark, ...
Microbial genomics 6 (2), e000335, 2020
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages
JE Phelan, F Coll, I Bergval, RM Anthony, R Warren, SL Sampson, ...
BMC genomics 17, 1-12, 2016
PrimedRPA: primer design for recombinase polymerase amplification assays
M Higgins, M Ravenhall, D Ward, J Phelan, A Ibrahim, MS Forrest, ...
Bioinformatics 35 (4), 682-684, 2019
Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data
B Sobkowiak, JR Glynn, RMGJ Houben, K Mallard, JE Phelan, ...
BMC genomics 19, 1-15, 2018
Understanding molecular consequences of putative drug resistant mutations in Mycobacterium tuberculosis
S Portelli, JE Phelan, DB Ascher, TG Clark, N Furnham
Scientific reports 8 (1), 15356, 2018
Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk factors for an unusual pattern of microcephaly in Brazil
MC Campos, JG Dombrowski, J Phelan, CRF Marinho, M Hibberd, ...
PLoS One 13 (8), e0201452, 2018
Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. Genome Med 11: 41
JE Phelan, DM O’sullivan, D Machado, J Ramos, YEA Oppong, ...
DOI: https://doi. org/10.1186/s13073-019-0650-x. PMID: https://www. ncbi …, 2019
Machine Learning Predicts Accurately Mycobacterium tuberculosis Drug Resistance From Whole Genome Sequencing Data
W Deelder, S Christakoudi, J Phelan, ED Benavente, S Campino, ...
Frontiers in genetics 10, 922, 2019
The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs
J Phelan, DM O’Sullivan, D Machado, J Ramos, AS Whale, J O’Grady, ...
Genome medicine 8, 1-9, 2016
Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole
MC Campos, J Phelan, AF Francisco, MC Taylor, MD Lewis, A Pain, ...
Scientific reports 7 (1), 14407, 2017
Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance
YEA Oppong, J Phelan, J Perdigão, D Machado, A Miranda, I Portugal, ...
BMC genomics 20, 1-15, 2019
Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates
P Palittapongarnpim, P Ajawatanawong, W Viratyosin, N Smittipat, ...
Scientific reports 8 (1), 11597, 2018
A novel multiplex qPCR assay for detection of Plasmodium falciparum with histidine-rich protein 2 and 3 (pfhrp2 and pfhrp3) deletions in polyclonal infections
L Grignard, D Nolder, N Sepúlveda, A Berhane, S Mihreteab, R Kaaya, ...
EBioMedicine 55, 2020
Global analysis of Plasmodium falciparum histidine-rich protein-2 (pfhrp2) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis
N Sepúlveda, J Phelan, E Diez-Benavente, S Campino, TG Clark, ...
Infection, genetics and evolution 62, 211-219, 2018
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Articles 1–20